Protein Info for H281DRAFT_03230 in Paraburkholderia bryophila 376MFSha3.1

Annotation: carbohydrate ABC transporter substrate-binding protein, CUT1 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 417 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF01547: SBP_bac_1" amino acids 42 to 330 (289 residues), 162.2 bits, see alignment E=3.1e-51 PF13416: SBP_bac_8" amino acids 50 to 353 (304 residues), 108.9 bits, see alignment E=4e-35

Best Hits

KEGG orthology group: K02027, multiple sugar transport system substrate-binding protein (inferred from 97% identity to bug:BC1001_4095)

Predicted SEED Role

"Multiple sugar ABC transporter, substrate-binding protein" in subsystem Fructooligosaccharides(FOS) and Raffinose Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MG72 at UniProt or InterPro

Protein Sequence (417 amino acids)

>H281DRAFT_03230 carbohydrate ABC transporter substrate-binding protein, CUT1 family (Paraburkholderia bryophila 376MFSha3.1)
MTMKPRKVLLALAVAAAALGTSVVSTAQAGTLTANIAFKGASQRAVWQSVVDEFKKAHPG
IDVKVSFIDEEAYKVQLPGWLSTVAPDIVNWHDGERMAYYAQRGLFEDLSGDWAKNSWND
MYASTKEASSYKGRQYAAPTVYYSWGMFYRKDLFQKAGISGEPKTWDQFLDDCKKLKAAG
ITPIAVAGRDAWTLAGWFDYLDLRLNGNAFHQKLMAGEIAYTDPRVKKVYTTWKQLIDAG
YFIDNSLSYDLDSVQPFLFQGKAAMMLMGTFITAGFPPNVKPEMGYFQFPIIDANVPTAE
DGPVESLHIPSKAKNKADAHTFLAFVETPEIGAKLAAGLGSLSANSKSPEPEDPISKIGF
QILANTKGGIAQFYDRDMTKEMADEGMKGMQQFVSDPSKLDSVLAQLEQTRKRIYKK