Protein Info for H281DRAFT_03101 in Paraburkholderia bryophila 376MFSha3.1

Annotation: CBS domain-containing membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 388 transmembrane" amino acids 29 to 47 (19 residues), see Phobius details amino acids 53 to 72 (20 residues), see Phobius details amino acids 79 to 99 (21 residues), see Phobius details amino acids 105 to 123 (19 residues), see Phobius details amino acids 129 to 147 (19 residues), see Phobius details amino acids 153 to 171 (19 residues), see Phobius details PF04982: HPP" amino acids 56 to 176 (121 residues), 133.6 bits, see alignment E=4.2e-43 PF00571: CBS" amino acids 243 to 294 (52 residues), 42.8 bits, see alignment 5.6e-15 amino acids 322 to 375 (54 residues), 43.2 bits, see alignment 3.9e-15

Best Hits

KEGG orthology group: None (inferred from 92% identity to bgf:BC1003_5186)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (388 amino acids)

>H281DRAFT_03101 CBS domain-containing membrane protein (Paraburkholderia bryophila 376MFSha3.1)
LSRSIVLRWLSSFIPVPVTVKWQERARSCLGALLGIAFTGGSMYLLLGPGANIPLLVAPM
GASAVLLFAVPASPLAQPWSIIGGNLVSATIGVTCANVIGDPTLAAALAVALAICGMFAL
RCVHPPSGAVALTAVLGGPAIHALGYRFVLEPIAIQSVALLAAAIAYHVATGHRYPHSAR
ASRSAAGSTADADSRAGFTRADLEAVLKRRSEMLDIDPDDLESLLRETQLQAFSRSFNEL
TCENIMSRHVVSVSAGTRAVAAWALLKRNKVKALPVIDADHGLIGIVTRADLVDKRIFGQ
FVPFIAYIDGWLRGDALRAPTVGSVMTTDVCTVKTNAPITDLVPMFANFGHHHIPVLDTA
GHVVGMITQVDLISGLYRQTVVKAQQAA