Protein Info for H281DRAFT_03034 in Paraburkholderia bryophila 376MFSha3.1

Annotation: xanthine dehydrogenase YagT iron-sulfur-binding subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 195 PF00111: Fer2" amino acids 9 to 59 (51 residues), 34.6 bits, see alignment E=1.5e-12 PF01799: Fer2_2" amino acids 76 to 165 (90 residues), 101.7 bits, see alignment E=1.9e-33

Best Hits

KEGG orthology group: K13483, xanthine dehydrogenase YagT iron-sulfur-binding subunit (inferred from 80% identity to bvi:Bcep1808_3042)

Predicted SEED Role

"Periplasmic aromatic aldehyde oxidoreductase, iron-sulfur subunit YagT"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (195 amino acids)

>H281DRAFT_03034 xanthine dehydrogenase YagT iron-sulfur-binding subunit (Paraburkholderia bryophila 376MFSha3.1)
VPPRPVELNVNGRAYTLQLEPRVTLLDALREYAGLMGTKKGCDRGQCGACTVIANGRRIN
SCLTLAVMHEGETITTVEGLASNGALSPLQRAFIEHDAFQCGYCTPGQLCSATALLQEFR
NGTASVVTADVRQRPAKLSDEEIRERMSGNICRCGAYSNIVAAIRAAHEGSGQNAGTAGA
DHRDHRDNHDNRDNA