Protein Info for H281DRAFT_03001 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Autotransporter adhesin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 952 PF13018: ESPR" amino acids 3 to 48 (46 residues), 40.9 bits, see alignment 3.3e-14 PF05662: YadA_stalk" amino acids 92 to 135 (44 residues), 24.2 bits, see alignment 5.5e-09 amino acids 175 to 210 (36 residues), 16.7 bits, see alignment (E = 1.2e-06) amino acids 288 to 325 (38 residues), 20.4 bits, see alignment (E = 8.6e-08) amino acids 397 to 437 (41 residues), 29 bits, see alignment (E = 1.8e-10) amino acids 520 to 551 (32 residues), 13.9 bits, see alignment (E = 8.9e-06) amino acids 630 to 671 (42 residues), 25.9 bits, see alignment (E = 1.6e-09) amino acids 748 to 792 (45 residues), 24.7 bits, see alignment 4e-09 amino acids 850 to 884 (35 residues), 32.1 bits, see alignment (E = 1.9e-11) PF03895: YadA_anchor" amino acids 894 to 952 (59 residues), 55.4 bits, see alignment 8e-19

Best Hits

KEGG orthology group: None (inferred from 82% identity to bug:BC1001_5176)

Predicted SEED Role

"surface protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (952 amino acids)

>H281DRAFT_03001 Autotransporter adhesin (Paraburkholderia bryophila 376MFSha3.1)
MLNKTYKTVWNEARRVYVAASEAARSGGARCASVCRAVAAASAGLVGALVFAQPAGAQEC
APAGCANVADALFYDSAAHDMVTLGNSGTPVKLTNLAQAALNANSTDAVTGAQLHATNDA
VSQNSASLSSLASNLDNGQIGLVRQDLGTGNLTVGAGIDGRSVDFTGLGGPRELVGVAAG
TGAQSAVNVTQLKQVVSTLGGGASVSASGSTVGPRYYVQSATQTTVGNALTSLDAGITSL
QSQIVSGSIGLVKQDLGTRDILVGPSSTGIRVNVAGLNGNRTVTGLSRGAIGASSTDAVN
GAQLYGNAASVAAALGGGSAVNVDGTAKAPAYNIGGVTYGDVGSALAAAVTTSVATSTAT
STAAGASAIAAATANSVQYDSSVHDSMTLGSAGAPVRVTNVSAGQLTSDSLDAVNGGQLF
AANRAIALNSDNIATLDGRVGTNTTNIANLDQRVNVNTTKIAGLDTRTTTLEGNLTNVAN
QITNGEIGVVQQDLVSRIISVGQNTNGARVDFAGTGGARQLTGVAAGRTDTSAINFAQFS
PVVAGLGGGAQIGIDGSVIAPSYHVQGRTQSNVGDALGSLDNGLTTLQQKVEVGGIGLVT
QDPASRVIQIGALTDGRAISVAGTLGNRVVTGVARGSLNAASTEAVNGSQLFAQAASTAT
ALGGGSTVNADGSISAPSYRVGGQVVNTVGGALSNLDGRVTQNSGDIAGLQNAVGRIGGT
VANALQYDSSAHDKVTLGGISANAATVQLTNLKNGEVSATSSDAVTGAQLWQTNQQISSI
DKSVKNYAATGNAYMAVNSSAEAPQATGNGSLALGGGAQASAANTVALGEGAVADQPDTV
SVGSPGNERRITNLAPGQAAGDAVNMQQLQSGMGDLARRAYAGTASAMAMNMVPDVDATK
NLAIGVGTAGYMGYQAVAVGLSARVAQNFKVKLSAGISSVTTSVGAGAAYQW