Protein Info for H281DRAFT_02925 in Paraburkholderia bryophila 376MFSha3.1

Annotation: ATP dependent helicase, Lhr family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1544 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details PF00270: DEAD" amino acids 65 to 251 (187 residues), 98.6 bits, see alignment E=1e-31 PF04851: ResIII" amino acids 76 to 249 (174 residues), 22.6 bits, see alignment E=2.7e-08 PF00271: Helicase_C" amino acids 312 to 413 (102 residues), 66.9 bits, see alignment 5.6e-22 PF08494: DEAD_assoc" amino acids 714 to 916 (203 residues), 165.9 bits, see alignment E=3.2e-52

Best Hits

Predicted SEED Role

"Lhr-like helicases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1544 amino acids)

>H281DRAFT_02925 ATP dependent helicase, Lhr family (Paraburkholderia bryophila 376MFSha3.1)
MTLVTTSVSTSVSTTTANPTTAPTAADSLRALPASLAERAAAHDALAGFHPAVAGWFLKS
FPAPTDAQAAAWPQIRQGRSTLVAAPTGSGKTLTAFLSALDDLVQQGLANNGALPDETLV
VYVSPLKALSNDIRLNLQVPLQGIAAELDARGLPPLDIRTAVRTGDTTQQERNALKKRAP
HILVSTPESLYVLLGSDSGRRMLCTVRTVIVDEIHALAGSKRGSHLALSLERLDALCGRR
LPRIGLSATQKPVSAVARFLVGGAPVDSDIPADCAIIDVGHIRERDLALEIPPVPLEAVM
PNEVWERVYDRLAELVALHSTTLIFVNTRRMAERAARHLTERLGKDAVAAHHGSLAKEHR
FDAEQRLKRGELRVLIATASLELGIDIGDVDLVCQMGSPRAIAPFLQRVGRSGHHVGGMP
KGRLFPTSRDDLIECAALLDCVRRGELDALRIPRAPLDVLAQQIVAEVSSTEWSEDALFD
LIRRAAPYAELAREQYDAVLRMLAEGYTSRNGPRAAYIHRDVVSGTLRGRRGGKLVAVTS
GGTIPENADYAVVLEPQAVNIGTVNEDFAVESLAGDVFQLGNASYRILRIESGRVRVEDA
QGQPPNIPFWLGEAPGRSDELSFGVARLREQIARLLASGDDATTPLDNAQASDTASKATA
SEYVPDATAEAPNPMPARLERAIDWLIAELGLDEAAARQIVDYLARARAALGVLPTQDTL
VMERFFDESGGTQLVVHAPFGSRVNRAWGLALRKRFCRQFNFELQAAATEDAIVLSLTGS
HSFVLDEVWRYLHSNSAERLLIQALLDAPLFGVRWRWNATTALGLPRYTGGRKTAPQLQR
MRSEDLLTSVFPEQAACLENVVGERELPHHPLVDQTVDDCLHDAMDSERWLALLRRMENG
DVRLVARDLPAPSPLAAEILNAKPYAYLDDAPIEERRTQAVLNRRWTDPASADDLGALDA
DAIASVRDEAWPQARSIDEMHEALTGLACITEAEAQHNEGWPEWLASLARSGRATRIEIA
ADAALWLPAERLTCFDALYRSRNSGTTNSGPRFTPPLTAPKGYTDEWSADDALLDVLRAR
LTGFGPLPADAIADALKLPRTSVEQALGRLEAEGYVMRGRFTPNTSEEEWCERHLLARIH
RYTVKRLRREIEPVERHDFMRFLFEWQHLTPDTRSEGRDALAAVLEQMEGFEAAASAWEE
DILPARVKAYSNTSLDELCRSGKIVWTRLTERSRSAAGPVRSTPIVLLPRPQVRTWSALI
DAERQPELSARAQSVYDALSQHGAMFFDELLHELRVLRIELESALGELVAAGLVNSDSFA
GLRALLKPAAKRNAYSGSRRARSSMGLGALIGGMDDAGRWALVNRRASIATSEETAAQPG
RPQQQRRRQLPAETLEHVAMTLLRRYGVVFWRVLEREADWLPPWRDLLRVYQRLEARGVI
RGGRFVNGLAGEQFALPEAIPLLREVRRHANDGAFVCVGGTDPLNLVGTLLVGERVPAVA
GNRVLYRDGVVIATLAAGAFWFEPSVEASPTERERARSWLTRRF