Protein Info for H281DRAFT_02902 in Paraburkholderia bryophila 376MFSha3.1

Annotation: VRR-NUC domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 607 PF21315: FAN1_HTH" amino acids 15 to 95 (81 residues), 119.5 bits, see alignment E=6.9e-39 PF18081: FANC_SAP" amino acids 100 to 166 (67 residues), 50.7 bits, see alignment E=2.6e-17 PF08774: VRR_NUC" amino acids 468 to 579 (112 residues), 121.1 bits, see alignment E=4e-39

Best Hits

KEGG orthology group: None (inferred from 82% identity to bug:BC1001_3729)

Predicted SEED Role

"Hypothetical protein, restriction endonuclease-like VRR-NUC domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (607 amino acids)

>H281DRAFT_02902 VRR-NUC domain-containing protein (Paraburkholderia bryophila 376MFSha3.1)
VATDAPPDSLAGDPYYLLNFERALAWLAQRYDDLLDASERAFLDTFARLPQASRALLVRM
LMRKGALFRASRLAYGEIGCPLQAAAPVSALGWVNPAPHLTLDDLFALTTRAELLDIFAE
ALSLIPGARSLRKPELLEALRPFYPERDELDGHDTDSCIARPLSAWHPRTTDCVFRVDIA
PLCDRLRLMFFGNLQQDWSEFVLADLGVFRYERVAFGPASRAFQQRADVDVYLALQACRD
ELDSIATSGALIGLEVENAALNDLVARVQSVETCNSWLELRRAKLLFRIGQHCERRQMWP
TALAVYEVCAWPGARHRRVRVLERAERFEAALSLALSAAASPESEEEAQRIARMLPRLRR
KLGGPAVRAAAARAAERSTLLLPRPQAPQSVEYVVRDHLTCESAPVHYVENALINSLFGL
LCWEPVFVALPGAFFHPFQRGPADLHAPDFYARRAEQFAACLAQLDSGAYRETIARHLHG
KAGVQSPFVFWGMLTPELVTTALDCLPAAHLKLWFERLLLDIRGNRSGLPDLIRFWPAER
RYELIEVKGPGDRLQDNQIRWLAYCVQHGMPVRVVDVRWADEALDHAIADPSVGAQAHVT
LIAERTA