Protein Info for H281DRAFT_02840 in Paraburkholderia bryophila 376MFSha3.1

Annotation: solute:Na+ symporter, SSS family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 490 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 72 to 93 (22 residues), see Phobius details amino acids 117 to 136 (20 residues), see Phobius details amino acids 147 to 172 (26 residues), see Phobius details amino acids 184 to 205 (22 residues), see Phobius details amino acids 233 to 253 (21 residues), see Phobius details amino acids 270 to 291 (22 residues), see Phobius details amino acids 316 to 344 (29 residues), see Phobius details amino acids 364 to 382 (19 residues), see Phobius details amino acids 388 to 411 (24 residues), see Phobius details amino acids 421 to 444 (24 residues), see Phobius details amino acids 457 to 476 (20 residues), see Phobius details PF00474: SSF" amino acids 34 to 428 (395 residues), 85.7 bits, see alignment E=1.6e-28

Best Hits

Swiss-Prot: 66% identical to YHJB_BACSU: Uncharacterized symporter YhjB (yhjB) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 97% identity to bug:BC1001_3665)

Predicted SEED Role

"Acetate permease ActP (cation/acetate symporter)" in subsystem Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MKH1 at UniProt or InterPro

Protein Sequence (490 amino acids)

>H281DRAFT_02840 solute:Na+ symporter, SSS family (Paraburkholderia bryophila 376MFSha3.1)
MSALVIIAAITLFALFLGVRAKHGHDMSLEQWTVGGRSFGTAFVFLLMAGEIYTTFTFLG
GSGFAYGKGAPVYYILAYGTLAYILSYWMLPPIWRYAKQHHLVSQPHFFSRKYDSPALGT
LVALVGVAALIPYLVLQLKGLGIIVATASYGAISSTAAIWIGAAVVTVYVIVSGVRGSAW
NSVVKDLLILAIVLFLGIYLPLHYYGGLGEMFHAIDAARPGFLTFPAKGSSVTWFQSTVL
LTALGFFMWPHTFGSIFTARDERIFRRNAMVLPLYQLILLFVFFVGFAATLKVPGLKGGD
IDLSLFRLSLQTFDPWFVGVIGAAGILTALVPGSMILTSASTLLANDVYRGMVNRNATDA
TVANLARILVPVVALVAVAFTLHGGETIVALLLMGYSFVTQLFPAVICSLFPRNRATKQG
AFCGIVAGVAVVAITTTMHLTIGQLMPFLPDALKDVNIGFVALAVNIVVFIIVSAMTQSG
RVEHTHASAH