Protein Info for H281DRAFT_02703 in Paraburkholderia bryophila 376MFSha3.1

Annotation: monosaccharide ABC transporter membrane protein, CUT2 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 333 transmembrane" amino acids 25 to 44 (20 residues), see Phobius details amino acids 56 to 75 (20 residues), see Phobius details amino acids 81 to 100 (20 residues), see Phobius details amino acids 106 to 127 (22 residues), see Phobius details amino acids 136 to 156 (21 residues), see Phobius details amino acids 177 to 198 (22 residues), see Phobius details amino acids 227 to 248 (22 residues), see Phobius details amino acids 256 to 276 (21 residues), see Phobius details amino acids 283 to 303 (21 residues), see Phobius details amino acids 309 to 327 (19 residues), see Phobius details PF02653: BPD_transp_2" amino acids 53 to 321 (269 residues), 149.3 bits, see alignment E=6.3e-48

Best Hits

KEGG orthology group: K10440, ribose transport system permease protein (inferred from 44% identity to pfs:PFLU3994)

Predicted SEED Role

"Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MJ88 at UniProt or InterPro

Protein Sequence (333 amino acids)

>H281DRAFT_02703 monosaccharide ABC transporter membrane protein, CUT2 family (Paraburkholderia bryophila 376MFSha3.1)
MTSTAANRADTEALSRRVIRQLRSGIGPLFAALVIICIALSIASPEFLTTSTLTNIMVQV
SVVGIAAVGGTFVIITSGIDLSVGSLVALTGMVAATVMAGSSPGAIGLGIAGLCAALAVG
AAAGALNGLAVAWLRLVPFIVTLAMMAMARGLTLAISDGRTKFDFPNAFTAFGAKTVAGL
PMPMIVMLVIFVIGHVLLRKTTFGHQVFAVGGNQEAARLAGIPVHRVVFLTYMLAGVTAA
IAGIVLAGRLNSALPSAANGLELQVIAAVVIGGTSLAGGRGSIVGTFIGVVLIGVINVGL
SLLGVNPFWTQFIQGGVIFAAVLLDALSQRRKQ