Protein Info for H281DRAFT_02669 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Arabinose efflux permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 432 transmembrane" amino acids 27 to 51 (25 residues), see Phobius details amino acids 71 to 92 (22 residues), see Phobius details amino acids 101 to 119 (19 residues), see Phobius details amino acids 125 to 148 (24 residues), see Phobius details amino acids 160 to 180 (21 residues), see Phobius details amino acids 186 to 207 (22 residues), see Phobius details amino acids 242 to 263 (22 residues), see Phobius details amino acids 283 to 305 (23 residues), see Phobius details amino acids 313 to 332 (20 residues), see Phobius details amino acids 338 to 360 (23 residues), see Phobius details amino acids 401 to 422 (22 residues), see Phobius details PF07690: MFS_1" amino acids 34 to 376 (343 residues), 106.7 bits, see alignment E=1.2e-34 PF00083: Sugar_tr" amino acids 84 to 218 (135 residues), 67 bits, see alignment E=1.5e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (432 amino acids)

>H281DRAFT_02669 Arabinose efflux permease (Paraburkholderia bryophila 376MFSha3.1)
MGTSQGAKAAPVASVDAQAYRLSRYQWLALISAFLGWMFDSMDLNLFTLVLVPSVSQLLH
STDATEISKIGSYIIAGKLLTWGIGGVLFGVAADRYGRSRVMGLTILIYAAFTLLSAFAK
TWPQLAVAQAMAGFGIGGEWAAGAALVAESWPGRQRNRAMQIMQMAFAFGFLAAALDNLL
LGRFGWRVVLGVGAAPALVTILVRRFVPEPQRWVQVRESVVAESAMQTFTAIFAPGLRRK
TIIGVIVSSAAMLGCWGGLTFLPSWIHQLSAAAADQRNIGTTVSYAFILMMFGATLGYLT
LIWMLDAFGRRMSYFIFSLGSLIVSLVLFMTVHDVGGVLWLMPVYGYFVIGAFGTFAAYL
PELFPTRVRATGQGFCWNMARALTSIGPIAGNAVVSKFGSFPAASAAVSLLFIVGMVSIW
FGPETKGVPLDN