Protein Info for H281DRAFT_02627 in Paraburkholderia bryophila 376MFSha3.1

Annotation: transcriptional regulator, LacI family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 334 PF00356: LacI" amino acids 3 to 48 (46 residues), 67.5 bits, see alignment 1.4e-22 PF00532: Peripla_BP_1" amino acids 60 to 309 (250 residues), 104.7 bits, see alignment E=1.3e-33 PF13407: Peripla_BP_4" amino acids 63 to 309 (247 residues), 51.3 bits, see alignment E=2.6e-17 PF13377: Peripla_BP_3" amino acids 170 to 334 (165 residues), 122.5 bits, see alignment E=3.9e-39

Best Hits

KEGG orthology group: None (inferred from 59% identity to bac:BamMC406_6022)

Predicted SEED Role

"Transcriptional regulator, LacI family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MJK5 at UniProt or InterPro

Protein Sequence (334 amino acids)

>H281DRAFT_02627 transcriptional regulator, LacI family (Paraburkholderia bryophila 376MFSha3.1)
MATLSDVARRANVTAATVSNVLRNPDKVRPETSERVMRAIRELGYRPNLNARALAEGRSP
TLALMLSSIANPFYPEFVLAAERAARRAGYFLMVCNTDDDAETGRAYLTQIAGTLAEGVL
VLNTDIAINELCASAAVGAPIVLSLWEHPEELPALPCVAVDFAHAGALAARHLLELGHRD
IGMLVGDGCGGLQDARANGFRSVMRDAGLEPDDAAVLQIPDTIDAGFTACIELMEREPHL
SALFATNDLLAIGALQALATLGRKVPDDVSVIGITDIQLAHQVRPSLTTVAINTQAIAEA
SIELLIRLIHAPDAAAPPASVVAPLPTLVRRQST