Protein Info for H281DRAFT_02617 in Paraburkholderia bryophila 376MFSha3.1

Annotation: transcriptional regulator, RpiR family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 286 transmembrane" amino acids 240 to 261 (22 residues), see Phobius details PF01418: HTH_6" amino acids 26 to 71 (46 residues), 33.4 bits, see alignment 3.8e-12 PF01380: SIS" amino acids 131 to 255 (125 residues), 54.7 bits, see alignment E=9.3e-19

Best Hits

KEGG orthology group: None (inferred from 74% identity to bph:Bphy_5218)

Predicted SEED Role

"Transcriptional regulators"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (286 amino acids)

>H281DRAFT_02617 transcriptional regulator, RpiR family (Paraburkholderia bryophila 376MFSha3.1)
VHTFNELVAIIRDRFPDLSPQFQAGAAFLLDNPDEVAVLSMRKVAERAKVQPAAMVRLSQ
LLGFPGWNELREIFVSRVRTRPEPLTTRARSLVKGGSGNQLSRELAQAQSHNLELTLAQN
AGSVVETAKTLKKAPHIHVAGFRSCYPVAFSLLYGYRLFRPSVSLVSGEAGTLEMQLRGI
ERKHAVVVVSFAPYSVEALRVAQAAVERGAKLIALTDSAVSPIALNADHTLIFSHESPSF
FPSLVAASALAEMLVAHLLALEGKDAIANLQQAETALHSQGAYAAS