Protein Info for H281DRAFT_02554 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Outer membrane protein (porin)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 383 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF13609: Porin_4" amino acids 9 to 345 (337 residues), 170.3 bits, see alignment E=9.4e-54 PF00267: Porin_1" amino acids 53 to 362 (310 residues), 52.9 bits, see alignment E=4.2e-18

Best Hits

KEGG orthology group: None (inferred from 93% identity to bug:BC1001_3988)

Predicted SEED Role

"Outer membrane protein (porin)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (383 amino acids)

>H281DRAFT_02554 Outer membrane protein (porin) (Paraburkholderia bryophila 376MFSha3.1)
MKKTALTSASLALLVAAGSAHAQNSVTLYGVIDAGIGYVHNADSGSNLTGMLNGNLSGDR
WGLKGQEELGGGLKAIFTLENGFDVGTGKLGQGSREFGRQAFVGLTGATWGTVTAGRQYD
PIVDMVQGVTADNFFGSAFATPGDVDNNDNSARVSNAVKYVSPTYGGLQFEGLYAFSGVA
GQAGQGYTYSGAVSYSNGPFSLAGGYLRATNASATGARTSWASSTTDSIFDSHINDGYVT
AKSVSIAQVGGQYVIGPVTLGASYSNTQLKGDASSTFTSAEKYNSGKAFVAYQATPALVA
GVGYAYTAASGDTSAHYHQVSIGADYNISKRTDFYAVAAYQHASGTQRLADGTTQDAQAS
IGSYGYNGTDSQALAIVGIRHKF