Protein Info for H281DRAFT_02475 in Paraburkholderia bryophila 376MFSha3.1
Annotation: Rieske 2Fe-2S family protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K00479, Rieske 2Fe-2S family protein (inferred from 96% identity to bug:BC1001_5844)Predicted SEED Role
"Benzoate 1,2-dioxygenase (EC 1.14.12.10)" (EC 1.14.12.10)
MetaCyc Pathways
- meta cleavage pathway of aromatic compounds (9/10 steps found)
- benzoate degradation I (aerobic) (2/2 steps found)
- mandelate degradation to acetyl-CoA (13/18 steps found)
- toluene degradation IV (aerobic) (via catechol) (9/13 steps found)
- superpathway of aromatic compound degradation via 3-oxoadipate (22/35 steps found)
- superpathway of aerobic toluene degradation (16/30 steps found)
- superpathway of aromatic compound degradation via 2-hydroxypentadienoate (18/42 steps found)
KEGG Metabolic Maps
- Benzoate degradation via CoA ligation
- Benzoate degradation via hydroxylation
- Fluorobenzoate degradation
Isozymes
Compare fitness of predicted isozymes for: 1.14.12.10
Use Curated BLAST to search for 1.14.12.10
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A2Z5MHV5 at UniProt or InterPro
Protein Sequence (434 amino acids)
>H281DRAFT_02475 Rieske 2Fe-2S family protein (Paraburkholderia bryophila 376MFSha3.1) MKVSADVRAMIERRKKNYTLEAPFYTSEEIFALDMDVIFRKHWIQVAVEPDVPEPGDYIT VEIGHDSILIVRDDDMQVRAFHNVCRHRGARLCNTDKGSLGNIVCPYHSWTYNLNGDLMF AEHMGDQFDRCKHSLKKVHVENLAGLIFICLADNPPADFSVMRAAMEPYLAPHQLAGCKI AASIDIIEEGNWKLTMENNRECYHCVANHPELTISLYEYGFGYQRTPANEEGMAAFEETV ARRTAQWEAMKLPSAEIDRLADLVTGFRTQRLPLDRDGESQTLDAKVASKKLLGGFEQAD LGGLSFWTQPNSWHHFMSDHIVSFSVIPLSAGKTLVRTKWLVHKDAREGIDYDVNNLTAV WRATNDQDRALVEYSQRGATSSAYEPGPYSPFTEGLVEKFCEWYIGRIADYSNAPQTHDA EPSAFGEKVVSFKR