Protein Info for H281DRAFT_02473 in Paraburkholderia bryophila 376MFSha3.1

Annotation: electron transfer flavoprotein alpha subunit apoprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 389 PF01012: ETF" amino acids 61 to 209 (149 residues), 63.9 bits, see alignment E=1.8e-21 PF00766: ETF_alpha" amino acids 249 to 325 (77 residues), 94 bits, see alignment E=4.3e-31

Best Hits

KEGG orthology group: K03522, electron transfer flavoprotein alpha subunit (inferred from 92% identity to bug:BC1001_5842)

Predicted SEED Role

"Electron transfer flavoprotein, alpha subunit" in subsystem Acetyl-CoA fermentation to Butyrate

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (389 amino acids)

>H281DRAFT_02473 electron transfer flavoprotein alpha subunit apoprotein (Paraburkholderia bryophila 376MFSha3.1)
MNTIKRIDPRRPFTITVDGLRRITLGVTGVAGAMDFAASGAAHRAQPKPRRTSATPQHAM
LVAAHADRGALDDHARQTLAAAALIADATTEVVLLVFGQFTGDAGALGADKLIELSSFDR
RHFAPDDELNALAACVAAYAPVHLFLPDNATGDGDLGRRYAAAANASVATHVVEIDASHV
AAYAHANTAFASCALPEVVLLAPNAVDPKLPFVGAGERVAWRFDGEPTATKGIVRDLGIE
EMDAAQLALEEADFIVSAGNGVSDVPAFERLAATLGAAIGASRVAVDDGKFTRDKQIGAT
GKTVEASVYIAFGISGAVQHLQGIKDCRHVIAVNLDASAPIAKRANLTVIADAQETIAAL
NDAAAAARTARGTGAALLNSKAVAEGALA