Protein Info for H281DRAFT_02260 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Zn-dependent peptidase ImmA, M78 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 402 PF12844: HTH_19" amino acids 5 to 58 (54 residues), 31.6 bits, see alignment 2.8e-11 PF13560: HTH_31" amino acids 10 to 59 (50 residues), 39.7 bits, see alignment 1e-13 PF01381: HTH_3" amino acids 10 to 60 (51 residues), 50.7 bits, see alignment 3e-17 PF06114: Peptidase_M78" amino acids 175 to 288 (114 residues), 85.1 bits, see alignment E=6.8e-28

Best Hits

KEGG orthology group: None (inferred from 78% identity to pna:Pnap_4792)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (402 amino acids)

>H281DRAFT_02260 Zn-dependent peptidase ImmA, M78 family (Paraburkholderia bryophila 376MFSha3.1)
MFNSKRFSLARRRRGMTKREVAERIGVSERSVSAYEKGDQEPEPTNMQRIAAALGFPEAF
FFAGDPSELSGSVASFRSMSKMSARQRDSALGSGAIGLMLNEWLERNFNLPAPDLPDLGR
EPGTLTDPARLEDFEEDIPFPSISTAYGPEAAAEALRSQWGLGELPVKNVIALLESKGVR
VFSLAIDAKEVDAFSMWHGGTPFMFLNTYKSAEHCRFDAAHELGHLVLHRHGQTQGPELE
REANAFASAFLMPRKSVLAYAPRVTTLPGLVRAKHHWKVSVAALNYRVHALGLTSAWIYR
TLCIQLAEAGYRTNEPEPMAHEKSQVLEKVFKALRDEGTSRSDVAHALAVPPKEIDSLTF
NLMLSVLTGRGEGAHLDKGAARDRLRVIHARDSSASKRDKRT