Protein Info for H281DRAFT_02228 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Sel1 repeat-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 233 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF08238: Sel1" amino acids 68 to 100 (33 residues), 30.6 bits, see alignment 1.9e-11 amino acids 102 to 137 (36 residues), 37.8 bits, see alignment 1e-13 amino acids 139 to 173 (35 residues), 28.5 bits, see alignment 8.6e-11 amino acids 176 to 210 (35 residues), 23.3 bits, see alignment 3.7e-09

Best Hits

KEGG orthology group: None (inferred from 94% identity to bug:BC1001_0062)

Predicted SEED Role

"Sel1 domain protein repeat-containing protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5M7R4 at UniProt or InterPro

Protein Sequence (233 amino acids)

>H281DRAFT_02228 Sel1 repeat-containing protein (Paraburkholderia bryophila 376MFSha3.1)
MKWMVQGVVARMLITAALTTGVAAHAQDRLAKPNDPETQTAVADYNAGNFGAALAEFRKA
AERGSRLAQFNYAMMLLNGEGTAVNVDEGKKWLRKAADANMSHAQYVYGKMYDDGEFVGR
DPVEAHRWFLKAAQQGHVQAELALANQFLDGRGTDRDNQQAFVWYKKAAEGGDMTAQYVT
GSFYERGGDGVDKNLNVARAYYAAAAAQGDPAARLKYQQLSAQLRDHKEVKPQ