Protein Info for H281DRAFT_02130 in Paraburkholderia bryophila 376MFSha3.1

Annotation: methyl-accepting chemotaxis sensory transducer

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 609 transmembrane" amino acids 13 to 32 (20 residues), see Phobius details amino acids 196 to 218 (23 residues), see Phobius details PF12729: 4HB_MCP_1" amino acids 7 to 177 (171 residues), 51.6 bits, see alignment E=1.3e-17 PF00672: HAMP" amino acids 214 to 264 (51 residues), 30.8 bits, see alignment 4.3e-11 PF00015: MCPsignal" amino acids 330 to 485 (156 residues), 174.7 bits, see alignment E=2.3e-55

Best Hits

KEGG orthology group: None (inferred from 87% identity to bgf:BC1003_0162)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (609 amino acids)

>H281DRAFT_02130 methyl-accepting chemotaxis sensory transducer (Paraburkholderia bryophila 376MFSha3.1)
MAALNQFSIKAKLIAGFGTLSLIVVVVAGLSLKSLSDSTEGFSSFVRGINARADMAVQVR
TAVDRRAIAARNLVLVVKPEDFDIEKALVARAHEDVSANLKKLNEMVKASDASDKARSLV
AEMDRVETAYAPVATEIVGLALANKRDEAIARMDDQCRPLLAALIRATDAYADYAHSRQE
EMIASYAAHYEHQRNLLITISLLAIALAVGACVVLTRAVSGPLNLAIGVARTVSQGDLRT
RINVDGKDETSKLLGALREMNERLTTIVGRVRDASTSIAGAAREIAAGNMDLSQRTEQQA
ASLQETASSMEQLTSTVKQNADNAQQGSMLAANASSVAQKGSAVVGQVVSTMQDISDSST
KIADITGIIEGIAFQTNILALNAAVEAARAGEEGRGFAVVASEVRSLAQRSSSAAKEIKD
LIANSVDKIRDGSSLAGEAGKTMSEVTEAVACVTDIMLEIAAATSEQSRGIEQVNLAITQ
MDNVTQQNAALVEEAAAASRSMEEQGEQLNEVVGFFRVLEGVGGGARVAGGAAGAAGAAG
AAGGAGASVAGTAAVASVASVGREKPAVTRCAVVAAAPRVGASASMRTPVKAGTMPVVSA
GDDAGWDQF