Protein Info for H281DRAFT_02086 in Paraburkholderia bryophila 376MFSha3.1

Annotation: transcriptional regulator, MerR family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 137 PF13411: MerR_1" amino acids 5 to 73 (69 residues), 63.1 bits, see alignment E=3.1e-21 PF00376: MerR" amino acids 6 to 42 (37 residues), 45.1 bits, see alignment E=1e-15 PF09278: MerR-DNA-bind" amino acids 50 to 115 (66 residues), 57.2 bits, see alignment E=3.2e-19

Best Hits

KEGG orthology group: None (inferred from 94% identity to bpy:Bphyt_0464)

Predicted SEED Role

"Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family" in subsystem HMG CoA Synthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5M8R0 at UniProt or InterPro

Protein Sequence (137 amino acids)

>H281DRAFT_02086 transcriptional regulator, MerR family (Paraburkholderia bryophila 376MFSha3.1)
MNTQYTITELAREFDVTPRAIRFYEDQGLLSPSREGSSGLRRVYSGRDRTRLKLTLRGKR
LGFTLSEIRDLLDVYESPTDTVPQLQAFLATVARHRDVLERQLEDLNATLEDLAQYEAQA
RALLENGTHKAREAKPA