Protein Info for H281DRAFT_02042 in Paraburkholderia bryophila 376MFSha3.1

Annotation: putative spermidine/putrescine transport system permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 312 transmembrane" amino acids 35 to 63 (29 residues), see Phobius details amino acids 87 to 114 (28 residues), see Phobius details amino acids 133 to 159 (27 residues), see Phobius details amino acids 167 to 196 (30 residues), see Phobius details amino acids 223 to 244 (22 residues), see Phobius details amino acids 250 to 270 (21 residues), see Phobius details amino acids 281 to 303 (23 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 98% identity to bug:BC1001_0238)

Predicted SEED Role

"ABC transporter permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5M7G5 at UniProt or InterPro

Protein Sequence (312 amino acids)

>H281DRAFT_02042 putative spermidine/putrescine transport system permease protein (Paraburkholderia bryophila 376MFSha3.1)
MSASSDAGSVQPDLLVPPVPTPTPRVDGPGRASQMLAWIGVVPFFTFALLFLILPTGFLM
IGAFQDSQGHFTLANLRDLFQPSVLDAYWISFKVSAASAAGGALIGSLLAWAAVQGKLPG
WIRPTLMTFSGVASNFAGVPLAFAFICTLGRVGLVTVLLKKYLGFNLYSTGFSILSFSGL
TLTYLYFQIPLMVLIVTPALDGLKREWREACDCLGGTASQYWRYVALPVLWPSVLGATLL
LFANAFGAVATAYALTGSSLNIVPILLFAQIRGDVMHNQNLGYALALGMVLVTGLSNGGY
IWLRSRAERGRR