Protein Info for H281DRAFT_02041 in Paraburkholderia bryophila 376MFSha3.1

Annotation: putative spermidine/putrescine transport system permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 263 transmembrane" amino acids 7 to 28 (22 residues), see Phobius details amino acids 57 to 81 (25 residues), see Phobius details amino acids 92 to 113 (22 residues), see Phobius details amino acids 133 to 151 (19 residues), see Phobius details amino acids 189 to 211 (23 residues), see Phobius details amino acids 231 to 253 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 89 to 250 (162 residues), 51.1 bits, see alignment E=7.3e-18

Best Hits

KEGG orthology group: K02053, putative spermidine/putrescine transport system permease protein (inferred from 97% identity to bgf:BC1003_0250)

Predicted SEED Role

"Thiamin ABC transporter, transmembrane component" in subsystem Thiamin biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5M7R2 at UniProt or InterPro

Protein Sequence (263 amino acids)

>H281DRAFT_02041 putative spermidine/putrescine transport system permease protein (Paraburkholderia bryophila 376MFSha3.1)
MKSQSRVGAWTAMVVGSLYFLIPLIATFEFSLRMKRGTYSFEAYSVVLGDPRFQASFGYS
ILMALLTIVVGILLVVPTAYWVQLRLPKLRPVVEFITLLPLVVPAIVIVFGYLRIYNSSS
ILPLTSNERATDLLLVFGYVTLSLPYMYRAVDAGLRAVDVRSLTEAAECLGANWPTILFK
VIFPNIRSGILSGAFLTFAVVIGEFTLASLLDRPAFGPYLQLIGANRAYEPSALAIIAFM
ITWASMGLIQVFGSARALSGQKV