Protein Info for H281DRAFT_02033 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Site-specific recombinase XerD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 398 PF00589: Phage_integrase" amino acids 202 to 379 (178 residues), 69.7 bits, see alignment E=1.4e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (398 amino acids)

>H281DRAFT_02033 Site-specific recombinase XerD (Paraburkholderia bryophila 376MFSha3.1)
MQSAGNGFASIVICPRSVFSDFPTACELARIPGAADIQPRLFELPAVAIIVDPKGIPVWM
PTLYLADIALASHSVTGDTVRTYAEALLPWLEFLVHQGIQLSGVTEETIGLYRASIAHQN
CKKSPWRYASATVNQRVVVPANFHAWGQRCTLMPSPLGAYLCTPRSVVESRVSSHRRVFH
ASRLQKIAAPRVIARTPMTLGVDELQQLFAVTSSPYRLMLRWCVSCGLRRFEVCSLQVRD
LPSTAELGNFADGLARLTILRKGSKELTVHVPSRLVEETHWYVLTERPAPAANNGHFVFL
NRRGGRISRQMLTREFRKSADAIGSKATLHHLRHTFALVVLSILQRHEEAGQELNPLKAL
QTLLGHAAIETTETYLRAAQLSSDAVRDALDYLYGASI