Protein Info for H281DRAFT_02012 in Paraburkholderia bryophila 376MFSha3.1

Annotation: ammonium transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 497 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 100 to 122 (23 residues), see Phobius details amino acids 132 to 155 (24 residues), see Phobius details amino acids 200 to 220 (21 residues), see Phobius details amino acids 227 to 248 (22 residues), see Phobius details amino acids 262 to 284 (23 residues), see Phobius details amino acids 296 to 316 (21 residues), see Phobius details amino acids 328 to 348 (21 residues), see Phobius details amino acids 359 to 377 (19 residues), see Phobius details amino acids 383 to 403 (21 residues), see Phobius details amino acids 415 to 435 (21 residues), see Phobius details amino acids 447 to 467 (21 residues), see Phobius details TIGR00836: ammonium transporter" amino acids 98 to 494 (397 residues), 443.3 bits, see alignment E=4e-137 PF00909: Ammonium_transp" amino acids 100 to 495 (396 residues), 399.9 bits, see alignment E=5.3e-124

Best Hits

KEGG orthology group: K03320, ammonium transporter, Amt family (inferred from 92% identity to bug:BC1001_0249)

Predicted SEED Role

"Ammonium transporter" in subsystem Ammonia assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5M7W9 at UniProt or InterPro

Protein Sequence (497 amino acids)

>H281DRAFT_02012 ammonium transporter (Paraburkholderia bryophila 376MFSha3.1)
MRKLLMSLLMAGSLLAGGVGAALADDASAPAAASAATSDTASAPAPDASAAAAASAPAAD
ASAAPAASAAAAPAASDAAPAAPTAPFSVDSSKINSGDTAWMLTSTALVLFMTIPGLALF
YGGMVRKKNVLATLMQSFAITCLVTIIWTVVGYSLAFTPGGSFIGGFSRVFMAGMNYIKG
DKATTLTVSHLAPTIPETVYFVYQMTFAIITPALITGAFADRMKFSAMLVFMALWSIIVY
SPIAHMVWEPTGWLASAGVLDFAGGTVVHINAGIAGLVCCLVLGKRVGYGKEAMAPHNLT
LTLIGGAMLWVGWFGFNAGSAVAADGRAGFAMFATQVATAAAALAWMFAEWAAKGKPSVL
GIVSGAVAGLVAITPASGFVGTLGSLVIGIVAGVVCFWSATWLKHKLGYDDSLDAFGVHC
VGGIVGALLTGVFAVKDIGGFDGSVLLQAKGVLTTLIYSGVVSFILLKIIDMTMGIRVTE
EQEREGLDVSLHGEHVE