Protein Info for H281DRAFT_01874 in Paraburkholderia bryophila 376MFSha3.1

Annotation: paraquat-inducible protein B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 539 transmembrane" amino acids 28 to 49 (22 residues), see Phobius details PF02470: MlaD" amino acids 52 to 143 (92 residues), 44 bits, see alignment E=1.1e-15 amino acids 167 to 227 (61 residues), 39.7 bits, see alignment E=2.3e-14 amino acids 297 to 401 (105 residues), 43 bits, see alignment E=2.2e-15

Best Hits

KEGG orthology group: K06192, paraquat-inducible protein B (inferred from 64% identity to bge:BC1002_5539)

Predicted SEED Role

"Paraquat-inducible protein B" in subsystem Oxidative stress

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (539 amino acids)

>H281DRAFT_01874 paraquat-inducible protein B (Paraburkholderia bryophila 376MFSha3.1)
MPDNSNTPEPPDVPVAIVAPRARWRPQVVWLVPIIAVLIGGWLAVKAVLDQGPQITIMFN
TGDGLEAGKTKIKFREVDIGVIKGVSLSRDHKHVIATAEVVKDASDLLVDDTRFWVVRPR
ISGGTVSGLGTLLSGSFVGMDAGGSAKPRQTFTGLEVPPVISSDVPGREFVLRSQNMGSL
DAGTPIFYRRLQVGQITSYALDPDGRGVTLHVFINAPYDKFVRPDTRFWHASGVDVALDS
NGVRLNAQSLVSIIIGGVAFDTPEHSLDQPQAAAQTTFTLFENFGEAMKRHDRIVTRFVA
EFDDSVRGLTVGAPLDFRGITIGEVSGIYTRFDRESRKLSIVVEVAYYPERFTNRYESGP
TGSPVVKDTREFADYLVARGLRLQLRTGNLLTGQRYLAVDFFPDAPKAKIDWSKNPPQYP
TVPGSLQSLQDSVTRLVAKLNTIPFEAIGKNAQMTLQNANSLLAHLDTDVVPEAKNTLNA
AHGVMTSANGALQPDSALQQNVSDAMNQLAQTAAAVRTLADYLERHPEALVRGKQENKP