Protein Info for H281DRAFT_01830 in Paraburkholderia bryophila 376MFSha3.1

Annotation: transcriptional regulator, LacI family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 364 PF00356: LacI" amino acids 33 to 77 (45 residues), 57.1 bits, see alignment 2.4e-19 PF00532: Peripla_BP_1" amino acids 91 to 338 (248 residues), 87.4 bits, see alignment E=2.4e-28 PF13407: Peripla_BP_4" amino acids 92 to 341 (250 residues), 35.2 bits, see alignment E=2.1e-12 PF13377: Peripla_BP_3" amino acids 198 to 359 (162 residues), 126.3 bits, see alignment E=2.7e-40

Best Hits

KEGG orthology group: K02529, LacI family transcriptional regulator (inferred from 87% identity to bug:BC1001_5037)

Predicted SEED Role

"Transcriptional regulator, LacI family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MN02 at UniProt or InterPro

Protein Sequence (364 amino acids)

>H281DRAFT_01830 transcriptional regulator, LacI family (Paraburkholderia bryophila 376MFSha3.1)
MSDTPDTPDTTGFAATARTQTSRVRRGTGRTVLSDVAKLAGVSTATVSRVYNEPEKVSAV
VRERVEQAALALNWFPNAAGRALASTRSHIAGIIIPTLDDQVFASQVSGMQAAFATRGIT
LVLGCSNYDPTQALVQVRAMLARGVEAMAIVGEAHPPELFDALRLYRVPYAVTYAYRKES
PHVCIGFDNFAAYVQMTEHLIALGHRSFAVCIQPTRDNDRVQARVAGIRAALERHGLAVR
PEHMCDGESTIAFGRRSLRSIWQAASERPTALICGNDHIALGVLREAEELGIAIPRELSV
TGFDDLEISREIHPTLTTMRVDTREIGQLTAQYLLDMLDGKRAQRGQEVHALLQVRESTG
PASR