Protein Info for H281DRAFT_01828 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Sugar phosphate permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 439 transmembrane" amino acids 16 to 34 (19 residues), see Phobius details amino acids 54 to 73 (20 residues), see Phobius details amino acids 91 to 116 (26 residues), see Phobius details amino acids 148 to 169 (22 residues), see Phobius details amino acids 175 to 194 (20 residues), see Phobius details amino acids 238 to 258 (21 residues), see Phobius details amino acids 276 to 299 (24 residues), see Phobius details amino acids 312 to 330 (19 residues), see Phobius details amino acids 336 to 359 (24 residues), see Phobius details amino acids 371 to 393 (23 residues), see Phobius details amino acids 399 to 420 (22 residues), see Phobius details PF07690: MFS_1" amino acids 25 to 370 (346 residues), 194.6 bits, see alignment E=1.1e-61 amino acids 275 to 429 (155 residues), 38 bits, see alignment E=5e-14

Best Hits

Swiss-Prot: 40% identical to LGOT_ECOLI: Probable L-galactonate transporter (lgoT) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 95% identity to bug:BC1001_5039)

MetaCyc: 40% identical to galactonate:H+ symporter (Escherichia coli K-12 substr. MG1655)
TRANS-RXN0-227

Predicted SEED Role

"D-galactonate transporter" in subsystem D-galactonate catabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MKU2 at UniProt or InterPro

Protein Sequence (439 amino acids)

>H281DRAFT_01828 Sugar phosphate permease (Paraburkholderia bryophila 376MFSha3.1)
MSATSSHEQPPPKIRRAQVVALTLLMVSGIVNYLDRGTLAVANPLIRHDMGLTLGQMGLL
LSAFSWSYALFQLPVGGLVDRIGPRKLLGMGLIVWSLAQAAGGFVSTFGWFVLARILLGI
GEAPQFPSAARVVSNWFPLRERGKPTGIFNSASPLGTALAPLCLSVLVVNFHWRWAFIAT
GAAGLIVAAVWFAVYRDPVKATMSEAERRYLEGDEADRKPAPAVTFAEWRSLFSHGTTWG
MLIGFFGSVYLNWVYLTWLPGYLTMERHMSLMHTGVAASVPFFCGFLGSLTAGWFSDLIT
SRSASPVASRRNAVVIAMLGMVAFTIPAALVESNVLAIVCISVVIFLANAASASSWALAT
AAAPPNRVGSLGAIQNFGGFLGGALAPIFTGYIAQTWSFVPALLTAAGIAFIGAMSYLLL
VRKPIADTPATNETIQAPA