Protein Info for H281DRAFT_01825 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Outer membrane protein (porin)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 380 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF13609: Porin_4" amino acids 8 to 344 (337 residues), 191.7 bits, see alignment E=2.8e-60 PF00267: Porin_1" amino acids 53 to 380 (328 residues), 56 bits, see alignment E=4.6e-19

Best Hits

KEGG orthology group: None (inferred from 97% identity to bug:BC1001_5042)

Predicted SEED Role

"Outer membrane protein (porin)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MMN7 at UniProt or InterPro

Protein Sequence (380 amino acids)

>H281DRAFT_01825 Outer membrane protein (porin) (Paraburkholderia bryophila 376MFSha3.1)
MKKSLIVVAVAASFASVAHAQSSVTLYGLLDAGVTYTSNVAHNSKWAAGSGGIDQSRFGL
RGSEDLGGGLKAIFTLESGFNVNNGRFANNNGMFNRQAFVGLSSAQFGSVTLGRQYDAAQ
DFLAPLTATGSWGGTYFAHPFNNDNLNTNGGFAVNNSVKYSSANYAGFTFGGTYGFSNQA
GAFANNREYSLGAAYQWQGLRLGAAYAQQNNPGATNAAGTASNGGATDGGFLGATGNFRQ
REFGAAGSYAFGPATVGLAWTQSRIDNVAGVQQSLRANNYEVNGKYNLTPALGLGVAYTF
TDGKGYGTAANGGSTSVRYHQIGLQADYALSRRTDVYAQAVYQHAMGDGGVASIYSGDIT
QAPSSSKNQTAATVGLRHRF