Protein Info for H281DRAFT_01785 in Paraburkholderia bryophila 376MFSha3.1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 214 transmembrane" amino acids 26 to 46 (21 residues), see Phobius details amino acids 59 to 79 (21 residues), see Phobius details amino acids 91 to 113 (23 residues), see Phobius details amino acids 131 to 148 (18 residues), see Phobius details amino acids 158 to 178 (21 residues), see Phobius details amino acids 189 to 207 (19 residues), see Phobius details PF06532: NrsF" amino acids 10 to 213 (204 residues), 214.2 bits, see alignment E=9.2e-68

Best Hits

Swiss-Prot: 37% identical to NRSF_CAUVN: Anti-sigma-F factor NrsF (nrsF) from Caulobacter vibrioides (strain NA1000 / CB15N)

KEGG orthology group: None (inferred from 51% identity to hse:Hsero_3235)

Predicted SEED Role

"EXTRACYTOPLASMIC FUNCTION ALTERNATIVE SIGMA FACTOR"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (214 amino acids)

>H281DRAFT_01785 hypothetical protein (Paraburkholderia bryophila 376MFSha3.1)
MNTDQVISLLAAGLVPQSRRAVLNRFCIALTIGVLAALAAVVVSRGVQPDLAALFARPLF
WGKLAFPLLTAAAAILVAARLSIPGLSPGRAWFLLALPYAAVWAAAIAGLAAAPAADRVA
LLFGHTWRQCPLLIALLSVPCYLALSWAMRGLAPTRLRLTGAATGLLSGALATLAYVLRC
PEMSVPFWAAWYSIGMAIPALAGYLLARVSLRWS