Protein Info for H281DRAFT_01773 in Paraburkholderia bryophila 376MFSha3.1

Annotation: PAS domain S-box-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900 1988 PF07714: PK_Tyr_Ser-Thr" amino acids 92 to 249 (158 residues), 68 bits, see alignment E=4.3e-22 PF00069: Pkinase" amino acids 93 to 251 (159 residues), 94.3 bits, see alignment E=4.4e-30 PF13191: AAA_16" amino acids 292 to 481 (190 residues), 151.6 bits, see alignment E=1.5e-47 PF01590: GAF" amino acids 1310 to 1453 (144 residues), 53.4 bits, see alignment 2e-17 PF13185: GAF_2" amino acids 1310 to 1454 (145 residues), 39.7 bits, see alignment 2.9e-13 PF13492: GAF_3" amino acids 1311 to 1454 (144 residues), 31.7 bits, see alignment 9e-11 PF08447: PAS_3" amino acids 1490 to 1568 (79 residues), 42.7 bits, see alignment (E = 2.7e-14) PF00512: HisKA" amino acids 1762 to 1826 (65 residues), 30.8 bits, see alignment (E = 1.2e-10) PF02518: HATPase_c" amino acids 1874 to 1984 (111 residues), 78.8 bits, see alignment 2.1e-25

Best Hits

Predicted SEED Role

"Signal transduction histidine kinase CheA (EC 2.7.3.-)" in subsystem Bacterial Chemotaxis or Flagellar motility or Two-component regulatory systems in Campylobacter (EC 2.7.3.-)

Isozymes

Compare fitness of predicted isozymes for: 2.7.3.-

Use Curated BLAST to search for 2.7.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1988 amino acids)

>H281DRAFT_01773 PAS domain S-box-containing protein (Paraburkholderia bryophila 376MFSha3.1)
MDLTGFSLEPLHEDGELLLCRAQRPGSHISMLARVATQPASQSIMRLEHEYGLAPLLEPE
WAAQPLALDLGRVPPVLVLDDSGGDPLIRILGKPLELARCLRIAVNLAQAIGHAHERGII
HKDIKPANVLVDANDNVRLTGFGIASLLPHEHQPPAPPEIIAGTLRYMAPEQTGRMNRSI
DARSDLYSFGVTLYEMLTGSSPFVASEAIEWIHCHIARRPVPAAQRVEGLPAPVGDVVER
LLAKTAEQRYQTAGGVRADLQRCLSAWEADGEISPFALGKHDVSDRLMIPEKLYGRESEI
DALLAAFNRVVTFGDAQVVLVSGYAGIGKTSVVNELHKALVPSRGRFASGKFDQFKRDTP
YVPLAQAFQSLVRDLLNKTDTELERWRRELTEALAPNGQLMVGLIPELALIIGEQPAVPA
LPPHDARNRFHIVFRRLLGVFARPEHPLALFIDDMQWMDAATLDLIGHLATHPDVMHVLL
VGAYRDNEIDPAHRLTRMIEDMSGTETGRGTTLQRIDLVPLGAGSVTEIVADSLRCSAAT
AEPLAQLVHQKTGGNPFFVIQFLTALADEGLVAFDHRAAIWTWDLPRIRAKRLTENVVEL
MAAKLSRLPDDTRDALSRLAILGNVAKIDALKLVHGEPAASIDAKLWEAMKAGLVHRVDD
AYVFAHDRVQEGAYALIPESERAATHLHIGRTLASGRAAGELDEFLFDIVNHLNRGASLM
TDADELERTVALNYAAGQRAMHSTAFASARTYLAQGVALLGADAWSRHYERTFELYLAFS
ECEYLAGDFADADTLFDMMLERSRSNLDRAKVYGLRMELYQVAGRYDESFEVARLALRDF
GVLLPLHDDAVSSEVEAELRKIPLNLASRAIDTLVDAPVASDPVTLTIVDLLVESMPCAF
IARPAFYPLITLQAVNLSLRGGNTDKSSFAYGNYALMLVSSFGDIESAVQFSEMSLRLNE
KFGNRRFKGKLLHLHGNHINFWRRHVVTDLPILERASAACLDVGDLAFAGYLAFTTVWQM
IEKGTPLSDVQRSSERHASFARQSRNDAVYETIRLQQHFVAALQGEAGGGALTNAPAFDR
DASFAVIAKSNFGCGIAFHHIMNLMLAYLEGRYDDALHAAHCAQSVIDAAMALPIEATFY
FFHALTLAALDASAGDEQRVTRRRTIHATCEKFAVWTSHCPSNFRHRHALISAELARLEG
RDSDAMHHYEEAVRSAREHGFIQNQALAHELAARFYADRGLETVADTYLMNARSCYERWG
AWSKVTQLTRSHTRARPGTSKSDGTIAMSNEQVDLATVVNVSSAIFSDIDLNELIHTLMA
LSLEHAGADRCVLVLKRRNELRVEAEATTRADAVEVRLPRLPIEHAELPESVLRYVMRTG
DSLLLDDASSTSPYSSDEYVMRHDCRSILCLPLIKRSRMIGVLYLENNLASNVFTPPRTV
VLRMLASQAAMSLETARLYADLQHAEALLADAQRLSNTGSFDWHVSSGELFWSKQSFRIF
DYDLATLPTLELMLARVHPDDATFVRLMFDRATHDRQPFDVEHRLLMPDGSVRHLQLLAH
VIADADAGIRVLGALKDITTRKQAHAALLRSEHRYRSLFFDMPVGLWQIDAQPLIALLSS
LRGQGVEDLSEYIDHHPGWLDRAMDLLIVEEVNHHAAKMFGAHDRSMLLGPSPWVWRESP
DTFRRALESRYGGAPLFQETTRLPTLDGRVIDVLLTVARPGAAEDLGIALISLVDLTERV
RAQEMLQRLQADFAHAARISTLGELSASIAHELKQPLAAIAMNSSIGTRWLDRETPDVAE
ARLINQRIKIDAQRAVDIVDRIRTMAVRQGLKRSIALLDELIDEALVFLRHDVNALGVTI
MRKRAQPAAAVLADRVQLQQVIVNLVVNAMQAMKTTARPHGNITIRTYLPDATSVTCFVE
DSGPGLDESNMQRVFESFFTTKVNGMGMGLPICRSIIEMHGGEISADNASVHGGARFFFT
LPLASEAA