Protein Info for H281DRAFT_01732 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Multidrug efflux pump subunit AcrB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1064 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 333 to 353 (21 residues), see Phobius details amino acids 360 to 380 (21 residues), see Phobius details amino acids 386 to 408 (23 residues), see Phobius details amino acids 431 to 453 (23 residues), see Phobius details amino acids 458 to 482 (25 residues), see Phobius details amino acids 539 to 558 (20 residues), see Phobius details amino acids 884 to 904 (21 residues), see Phobius details amino acids 913 to 931 (19 residues), see Phobius details amino acids 938 to 961 (24 residues), see Phobius details amino acids 988 to 1007 (20 residues), see Phobius details amino acids 1019 to 1046 (28 residues), see Phobius details PF00873: ACR_tran" amino acids 3 to 1042 (1040 residues), 685.2 bits, see alignment E=1.4e-209

Best Hits

KEGG orthology group: None (inferred from 81% identity to bcj:BCAS0582)

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MJZ4 at UniProt or InterPro

Protein Sequence (1064 amino acids)

>H281DRAFT_01732 Multidrug efflux pump subunit AcrB (Paraburkholderia bryophila 376MFSha3.1)
MWIVRLALRRPYTFIVLAVLLFILGPLAIMRTPTDIFPNIDIPVVSIVWSYNGFSAEDMA
HRITSNYERALTTDVDDIEHIESQSLNGVSVVKIFFHPGADINRAIAEAASNSASILRVL
PPGTLPPNIITYNASTVPVLQLGLSSDTLPEQTLYDLGNSFIRTQLATVQGAAVPLPFGG
KIRQIMVELDPKALQAKGLAPIDVVNAVNAQNLILPGGTAKIGSREYNVEMNGSTKSVAA
LNDLPIKTVQGGVVYVRDVAHVIDGYAPQTNIVRSDGKRAALLQVEKTGSASTLTIIQQV
KDMLPKIAAGLPKALHITPLSDQSVFVKSAISGVVREALIAACLTAAMILLFLGSWRATL
IIAVTIPLSVLTSLIALAALGQTINIMTLGGLALAVGILVDDATVAIENITHHLEKGEPL
HDAILNGSGEIAVPTFVSTMSICIVFVPMFLLSGVARYLFVPLAEAVVFAMCASYFFSRT
LIPTLAMYLMRAPSKEGHNAQGRFAAVARFQARFERHFEALRSGYRAMLGRAISGRRRFV
PVYVALCLASLVLVPFAGRDFFPSVDTGQIRLHLRAPTGTRIEQTARITDQVEAKIRSVI
PKSEQAAVLDNIGVPVSGINLTYDSSDPVGPEDADILVTLQPKHKPTAQYVAQLRNVLAA
SFPGVTFAFLPADIVSQILNFGLPAPIDVQIVGNQLDKNRVVADRLLAQLRGVRGLVDAR
IQQPGDAPTIDVNVDRTKAIQAGLTQRDVAQNMLIALSGSSQTTPNFWLDPKNGVSYPLL
AEVPQYDIDSLQTLSNIPLTTNQATVAPQNQLGTLGTLDRSSQQAVVSHYNVQPVLDIFA
ATQGRDLGGVAADVSRIVDAARAQLPPGSSIVMRGQVQSMNESFAGLGAGLVFAIALVYL
LMVVNFQSWLDPLIIISGLPASLAGIAWMLFATHTTLSVPALTGTILCIGIATANSILVI
NTARESLQAGMEPLAAALDAGFNRFRPVLMTALAMLIGMLPMALGLGDGGEQNAPLGRAV
IGGLAFGTLSTLMFVPVVFGAVHAWLARRRAARAAAVPMNTQAR