Protein Info for H281DRAFT_01665 in Paraburkholderia bryophila 376MFSha3.1

Annotation: acetaldehyde dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 320 TIGR03215: acetaldehyde dehydrogenase (acetylating)" amino acids 4 to 307 (304 residues), 471.7 bits, see alignment E=4e-146 PF01408: GFO_IDH_MocA" amino acids 5 to 99 (95 residues), 24.5 bits, see alignment E=5.7e-09 PF01118: Semialdhyde_dh" amino acids 6 to 118 (113 residues), 55.5 bits, see alignment E=1.2e-18 PF09290: AcetDehyd-dimer" amino acids 129 to 282 (154 residues), 203.6 bits, see alignment E=2.1e-64

Best Hits

Swiss-Prot: 83% identical to ACDH1_BURL3: Acetaldehyde dehydrogenase 1 (Bcep18194_B1187) from Burkholderia lata (strain ATCC 17760 / DSM 23089 / LMG 22485 / NCIMB 9086 / R18194 / 383)

KEGG orthology group: K04073, acetaldehyde dehydrogenase [EC: 1.2.1.10] (inferred from 96% identity to bug:BC1001_0835)

MetaCyc: 71% identical to acetaldehyde dehydrogenase (acylating) (Pseudomonas sp. CF600)
Acetaldehyde dehydrogenase (acetylating). [EC: 1.2.1.10]

Predicted SEED Role

"Acetaldehyde dehydrogenase, acetylating, (EC 1.2.1.10) in gene cluster for degradation of phenols, cresols, catechol" in subsystem Biphenyl Degradation or Central meta-cleavage pathway of aromatic compound degradation (EC 1.2.1.10)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.2.1.10

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (320 amino acids)

>H281DRAFT_01665 acetaldehyde dehydrogenase (Paraburkholderia bryophila 376MFSha3.1)
MNEKVKVAIIGPGNIGTDLMIKVMRNSQHLEMAAMVGVDPKSDGLARAERMGVATTAEGI
DGLLKLDVFKNIDIVFDATSASAHKHHNDVLQKHGVQVIDLTPAAVGPYVIPAINLEAEN
ASNMNMVTCGGQATIPIVAAVSRVAKVHYAEIVASISSRSAGPGTRANIDEFTETTRSAI
ETLGGATRGKAIIVLNPAEPPLIMRDTVFVLSDLVDVNAVEDSVAQMITSVQAYVPGYRL
KQKIQFDIVSPEKPLNVPGLGVKHGLKTSVFLEVEGAAHYLPSYAGNLDIMTSAALACGD
MMARRRLAAGVVRGQKEPIQ