Protein Info for H281DRAFT_01456 in Paraburkholderia bryophila 376MFSha3.1

Annotation: sulfonate transport system substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 337 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details TIGR01728: ABC transporter, substrate-binding protein, aliphatic sulfonates family" amino acids 37 to 323 (287 residues), 210.8 bits, see alignment E=1.2e-66 PF04069: OpuAC" amino acids 58 to 245 (188 residues), 26.7 bits, see alignment E=8.3e-10 PF13379: NMT1_2" amino acids 61 to 260 (200 residues), 38.1 bits, see alignment E=3.2e-13 PF09084: NMT1" amino acids 77 to 258 (182 residues), 51.6 bits, see alignment E=2.4e-17 PF12974: Phosphonate-bd" amino acids 80 to 265 (186 residues), 30 bits, see alignment E=7.4e-11

Best Hits

KEGG orthology group: K02051, sulfonate/nitrate/taurine transport system substrate-binding protein (inferred from 76% identity to bpy:Bphyt_6158)

Predicted SEED Role

"ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components" in subsystem Alkanesulfonate assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (337 amino acids)

>H281DRAFT_01456 sulfonate transport system substrate-binding protein (Paraburkholderia bryophila 376MFSha3.1)
VTLSIFRLLARVALSTLLAVGAAQAQTTGNVPAPLKLRIGYQKSSTLITILKARGSLEQA
LAPLGVSISWNEFASGLPLTEALNADAVDFSADVADTVPVFAQAAHARFVYVAQEAPSPG
AQAIIVKRNGPVRTLVDLKGRRIAVTKAAGSHYLLLAALAKAGLAPADVRISYLTPADGR
AAFERGSVDAWVTWDPYVASVDQAPDVRILANGAGLASYQRYYLASSSFAAAHPEVISTV
FAQLSSAGAWVRSHPDDAAKLLAPIWGLDAATIERANARRSYAVRAVETQNFGEQQKIAD
TFYRAGLLPAPVETSTALRWNFVAKRAEVAGVALTAR