Protein Info for H281DRAFT_01444 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Multidrug efflux pump subunit AcrB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1062 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 334 to 353 (20 residues), see Phobius details amino acids 360 to 380 (21 residues), see Phobius details amino acids 386 to 407 (22 residues), see Phobius details amino acids 431 to 454 (24 residues), see Phobius details amino acids 458 to 460 (3 residues), see Phobius details amino acids 466 to 490 (25 residues), see Phobius details amino acids 537 to 556 (20 residues), see Phobius details amino acids 880 to 900 (21 residues), see Phobius details amino acids 909 to 928 (20 residues), see Phobius details amino acids 935 to 959 (25 residues), see Phobius details amino acids 983 to 1003 (21 residues), see Phobius details amino acids 1015 to 1038 (24 residues), see Phobius details PF00873: ACR_tran" amino acids 3 to 1038 (1036 residues), 652.9 bits, see alignment E=4.1e-200

Best Hits

KEGG orthology group: None (inferred from 74% identity to bcj:BCAM1421)

Predicted SEED Role

"Cation/multidrug efflux pump"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MJH6 at UniProt or InterPro

Protein Sequence (1062 amino acids)

>H281DRAFT_01444 Multidrug efflux pump subunit AcrB (Paraburkholderia bryophila 376MFSha3.1)
MWIVNVALKRPYTFIVMAILIVLATPFVLFTTPVDVLPEINIPVVSIIWTYNGLSAEDMA
HRIASVNERSLTTTVNDIEHIESQSLAGITILKVFLQPTANIQTAIAQTVAVEQAQLKQM
PPGATPPLVISYSASSIPVIQLGLSSTKLSEQQLNDTALNFLRPQLVTIPGAAVPYPYGG
KSRLISVDLNTRALLSKGLTPLDVVSAFNAQNLILPTGTAKIGPKEYTINMNGSPATLEG
LNDIPVRTVNGATTYLREVAHVRDGFSPQTNIVRENGHRGVLMSVLKNGSASTLSIVNTL
HGLLPAARAALPPDLKITALFDQSVFVKAAVQGVVREAVVAAALTAAMILLFLGNWRSTC
IIAISIPLSILSSLIALHALGQTINIMTLGGLALAVGILVDDATVTIENIERHLHMGTNL
HDAILEGAGEIAIPALVSTLCICIVFVPMFFLTGVARYLFVPLAEAVVFAMLASYVLSRT
LVPTLAMLLMGHAHKPKADMKPSLFARLYRRFDNGFERMRAAYIVILSSLLVRRARFGSI
FLGFCVVSMGLAFVLGEDFFPSVDAGNIRLHMRAPTGTRIEETARLADEVEKVIREVVPE
KELGTILDNLGLPYSGINLSYSNAGTIGTLDGEIQIALKEGHEPTQLYVDKLRAMLPQRF
PGVEFFFQPADIVTQILNFGLPAAVDIQIAGADQQGNFDVARKLLKQVRMIPGTVDTHIQ
QKLDEPAINLQMDRTRLQQLNLTASNVAQNVLISLSGSSQTSPGFWYNDRNGVEYNVAVQ
TPQYSISSIDDLLRTPVSASATGPTQLLGNLVRVQPQNQFAVVTHYNIRPVIDLYVSVDK
RDLGSVADQVDKLVEQARASLPRGSQITVRGQVQTMRSSYFGLGLGVAMAIVLVYLLIVV
NFQSWVDPLIIVSALPAALAGIVWMLFLTGTHLSVPALTGAIMTMGVATANSILMVAFAR
QRLSAGAPPLTAALEAGASRIRPVLMTAFAMIIGMIPMALGLGEGAEQNAPLGRAVIGGL
LFATVSTLFFVPLVFAGIHTRLARRHRNDHEESGNGDAGQPA