Protein Info for H281DRAFT_01418 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Signal transduction histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1530 PF00512: HisKA" amino acids 359 to 426 (68 residues), 57.5 bits, see alignment (E = 4e-19) PF02518: HATPase_c" amino acids 474 to 580 (107 residues), 97 bits, see alignment 3.4e-31 amino acids 1125 to 1246 (122 residues), 65 bits, see alignment E=2.9e-21 PF00072: Response_reg" amino acids 646 to 756 (111 residues), 87.8 bits, see alignment 2e-28 amino acids 1268 to 1379 (112 residues), 44.9 bits, see alignment 4.3e-15 amino acids 1418 to 1527 (110 residues), 62.1 bits, see alignment 2e-20 PF13185: GAF_2" amino acids 794 to 941 (148 residues), 59.3 bits, see alignment E=1.7e-19 PF01590: GAF" amino acids 795 to 940 (146 residues), 47.1 bits, see alignment E=1.3e-15

Best Hits

Predicted SEED Role

"Chemotaxis protein methyltransferase CheR (EC 2.1.1.80)" in subsystem Bacterial Chemotaxis (EC 2.1.1.80)

Isozymes

Compare fitness of predicted isozymes for: 2.1.1.80

Use Curated BLAST to search for 2.1.1.80

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1530 amino acids)

>H281DRAFT_01418 Signal transduction histidine kinase (Paraburkholderia bryophila 376MFSha3.1)
VRDQTSSDAKRAAVSVAHDFLYGGGEMGALLRAHNWSATPLGEPETWPQSLRSALSICLE
ANFPIAIYWGPELALLYNDAWSSIPGKKHPGALGRPGREVWPEIWDTIGPLFHQVQESGA
GVWQHDQLLPMHRHGYTEECYFNFTFSPIRGEGGQVEGIFNAVLETTSSVLAERRERALR
ELAEALAARRDELEVFAVAATLLATKSVDVPFSLLYRIDDNAQQAHLMGLTGVDRDSAAA
PAVIALSEADTPWPLASVLHTGQKRLVEDLAERFTTPLPGGPWPEPCTQALILPIQSTAH
PGTVAAILVAGISPRGAADDDYQAFLERAASHIATSLASARAYEEERRRAEALAEIDRAK
TTFFSNVSHEFRTPLTLMLGPIEELLADPEQLGEEGLRQIQLAHRNGLRLLKLVNSLLDF
SRIEAGRLKASFQATDLAQLTTDLASNFRSAMERAGLTLTVDCETLTQPVYVDRDMWEKI
VLNLLSNAFKFTFEGGVSVELRQRDTAELVVRDTGTGIPEAELPRIFERFHRIEGARGRS
FEGSGIGLALVEELVRLHGGTVRVESEIGKGTVFTVAIPFGAKHLATPLIEHEGPVGSSA
LRVEAYVGEAERWLPDAQAPHETSDRERIGESVTAAARPAIDGAHILLADDNADMRAYVQ
RLLGGSHHVEVVADGQAALETIRRRRPDLLLTDIMMPRLDGFGLIRSIRGDATLKDLPII
ALSARAGEEASLDGLAAGADDYLVKPFSARELVARVDSALAMATLRRQMSHTLRDEANLL
EVLNKIGATIAAELDLDQAVQVVTDAAKELTGAAFGAFFYNVLDERGERYTLYSISGVPR
EAFSKFPMPRNTKVFAPTFNGEAIVRSADIKRDPRYGNSAPYFGMPEGHLPVCSYLAAPV
VSRSGEVLGGLFFGHPEPDVFTERAERLLLGVAAQAAIAIDNARLYQAAQTEIAQRTLTE
QALRESEERQLRLNETLEAKVVERTLELQAANEQLLTAAEERERVEEALRHAQKMEAIGK
LTGGVAHDFNNLLQVIAGNLQLLARDINGHEAGERRLRNALAGVTRGSKLASQLLAFGRR
QPMRPKVVNLGRFVRDMDDMLRRALGEEIEIETVISGGLWNTMVDPSQVENALLNLAINA
RDAMKGRGKLTIEAGNASLDAVYAAAHPDVRPGQYVMLAVTDTGSGMSGEVMEHAFEPFF
TTKPEGQGTGLGLSMVWGVVKQSEGHIKIYSEVGEGTTIRIYLPRSRQEEDRTPEAETAP
AVGGTETILVVEDDEDVRNTVVDMLTDLGYRVLKARDAQSGWAIIESGVPIDLLFTDVVM
PGPLRSPELARKARERLPDIAVLFTSGYTENAIVHGGRLDEGIELLSKPYTREALARRLR
HVLANQRQLNSQRPAPAVRARPARERPVIEVASPALRVLLVEDEELILMSTGDMLESLGH
RVFTAASGEQALPILDAHRVDVLVVDLGLPGMSGSELAVQARKKYPKLHVVIASGNPDPS
VLSNEWLAGAVILAKPYDEQGLTRAIRGKQ