Protein Info for H281DRAFT_01387 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Cytochrome c biogenesis factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1594 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF14559: TPR_19" amino acids 135 to 202 (68 residues), 33.8 bits, see alignment (E = 2.1e-11) amino acids 302 to 365 (64 residues), 30.9 bits, see alignment (E = 1.6e-10) amino acids 382 to 433 (52 residues), 26.1 bits, see alignment (E = 5.4e-09) amino acids 414 to 469 (56 residues), 26.9 bits, see alignment (E = 2.9e-09) amino acids 492 to 556 (65 residues), 40.1 bits, see alignment (E = 2.2e-13) PF13432: TPR_16" amino acids 380 to 438 (59 residues), 39.9 bits, see alignment (E = 3e-13) amino acids 485 to 534 (50 residues), 17.2 bits, see alignment (E = 3.6e-06) amino acids 518 to 575 (58 residues), 19.4 bits, see alignment (E = 7.4e-07) PF13429: TPR_15" amino acids 591 to 689 (99 residues), 30.5 bits, see alignment 1.5e-10 PF13176: TPR_7" amino acids 742 to 771 (30 residues), 17.3 bits, see alignment (E = 2.3e-06) PF05420: BCSC_C" amino acids 1221 to 1571 (351 residues), 389.9 bits, see alignment E=6.4e-120

Best Hits

KEGG orthology group: None (inferred from 87% identity to bxe:Bxe_B2043)

Predicted SEED Role

"Cellulose synthase operon protein C"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1594 amino acids)

>H281DRAFT_01387 Cytochrome c biogenesis factor (Paraburkholderia bryophila 376MFSha3.1)
MRLSALALSMRFALSLPLACCLAAAAPDALAQAPAPGSKDPMGVLIDQGKYWQSHQRGDL
AEQAWLKVLRIDPKQPDALFGMGMVLADRKDGAGAQQYLSRLKAVAPNYPSLDELGRRLG
ESSLRDQTVNDARRLAQSGQSASAVQEYQRALSGKPATPALQLEYYQALSATPQGWDQAR
RGLEQLARDNPDDPRYALAYAQHLTYRDVTRRDGIARLQKLAGDSTVGAAAKKSWRQALL
WLDARPSDAALYQAYLQSANDDAAVKARFDSMVQQDKAARERAQENASVDARGRTVAEGF
AALDRNDAATARAKFSSVLATSPNDTDALGGMGIAALKQEHFAEARNYLERASRNGNPAR
WKTALDSATYWTYTSDAIGARSNGEFAKAKSLFERAIAMNPSDVTAQVLLGEMLLANRDA
AGAEQAYRMALRRQADNPDAIRGLVGALAAQGRGDEALQFANRLNTEQQSKAGGINRLRG
EAQAAQARAAEAHGDLGSARSLFEDALLNTPDDPWLRLDLARIYVRQGAVANARSMMDGL
LAAHPDMTDALYASALLSAETQDWSAGLAQLERIPVAQRTDAMAALQHRLWVHQQADLAT
RMARSGQTQQALATLHAAEPVAGNSPELIGVIAAAYQQAGDPNRALSLVRSAMNAAPGNT
DLLLQYAGILSTTQQQAELGMVMRRLSSMQLTPQQRTDFANLNLGIVIKQCDAVRQRGDL
ASAYDVIAPWLAAMPDNPDLQAALGRLYASAGDDRNALESYRVALRRKPDDLNLLQAAIS
AASGAKQFSYAESLASQALNAAPNDPGVLATVGRMYRSEGKLSLASTYLQRSLVAANTPL
MANAPRNAAASNVPRGWEAAMRRIGATPLPGTNPFEGKTATLAPTDADNAAPGFNASSNA
ARASLPYSQSSLPTQTVPNYPPPMQPAPYVAPYAAPAQPYTPNSAPAALPYNAPRQGADA
GGYGEDSYGSSQSGAPLQPYPGQNGQAAQPQMPMQAPMQPMQQQYNPAYAQQAPYPQQQY
GTPDGYAPTPWPMSPAAREAQANAGAMQPQPYGSTTAAAANGKRTASKKQNASKNGRNAA
VYAQQQQPYYGQQAYPQQQQPQGYAQQPYQSYPQQQGYGQQPYQPYPPQQQAYGNQGNQG
YYGQQQPYIPQPPSGYAQAYYPQQPGMNGSGGNGANYAQPNVANAQTLGVAEELAQVNRE
QASTVSGGIVFRNRSGEDGLSTLTDIEAPIQGRIKAGNGHVVVTATPVTLDAGTAAGNVS
TLARFGAGLSNSTSAAAAVAGTNNYGSQTASGVGLSVGYESRKLSGDIGVTPIGFRETNI
VGGAQYNGGITDKVSYSLAVARRAVTDSLLSYAGTRDAASGLEWGGVTSTGGLASLAWDD
GTSGLYVNAAFQYYDGHNVVTNTAWKGGGGIYTRLFKDADQTFTIGVNTTLMGYDKNLSY
FTYGQGGYFSPQQYVILNLPIEWTGRNGAFTYDLKGSIGVQHYRQDASNYFPLGNSGSLQ
AAAAGQAALIGSGVDSGAQYPGQSKTGVSYSLSAVGEYQLAPQLAFGATASLGNAYQYRE
WLAAVYVRYSFTRQTGLQPFPPTPLSSPYLSLSN