Protein Info for H281DRAFT_01263 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Glycine/D-amino acid oxidase (deaminating)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 383 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details PF01266: DAO" amino acids 15 to 353 (339 residues), 212.5 bits, see alignment E=3.3e-66 PF13450: NAD_binding_8" amino acids 18 to 51 (34 residues), 25.7 bits, see alignment 2.8e-09

Best Hits

Swiss-Prot: 49% identical to OOXB_RHIME: Opine oxidase subunit B (ooxB) from Rhizobium meliloti (strain 1021)

KEGG orthology group: None (inferred from 93% identity to bxe:Bxe_B2706)

Predicted SEED Role

"Opine oxidase subunit B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MJ34 at UniProt or InterPro

Protein Sequence (383 amino acids)

>H281DRAFT_01263 Glycine/D-amino acid oxidase (deaminating) (Paraburkholderia bryophila 376MFSha3.1)
MTLTSTAASPDTLADVVVIGGGLVGSAVAYGLAREGARVTVLDEDDGGFRASRGNFGLVW
IQGKGYGLSPYARWSRSSATRWPQLAQALLEESGIDVALKQPGGFHFCFNDDELAERDKR
LSTLQAELGDYPYQMLDAAEVRARIPQVGPAVIGASYTPMDGHVNPLKLLRALHTAMQAR
GVRLVSSERAQRIEPQAHGFVVHGKRGTYRAAKVVLAAGLGNRVLAPFVGLDAPVAPNRG
QVLVSERVAPFLHYPTLNVRQTDEGSLQFGDSMEEVGFDDFTTTHVLADIARRGVRAFPM
LQHVRLVRMWAALRVYSPDGFPIYDQSEAHPGAFVVTCHSGVTLAAAHALRVAPWIMGAP
MPGELPTFSARRFEHARELIPAH