Protein Info for H281DRAFT_01132 in Paraburkholderia bryophila 376MFSha3.1

Annotation: TRAP-type uncharacterized transport system, substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 446 transmembrane" amino acids 26 to 46 (21 residues), see Phobius details amino acids 348 to 371 (24 residues), see Phobius details PF16868: NMT1_3" amino acids 74 to 233 (160 residues), 42.8 bits, see alignment E=5.1e-15 PF09084: NMT1" amino acids 123 to 232 (110 residues), 25.1 bits, see alignment E=1.5e-09

Best Hits

KEGG orthology group: None (inferred from 92% identity to bug:BC1001_1569)

Predicted SEED Role

"TRAP-type uncharacterized transport system, periplasmic component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MBI4 at UniProt or InterPro

Protein Sequence (446 amino acids)

>H281DRAFT_01132 TRAP-type uncharacterized transport system, substrate-binding protein (Paraburkholderia bryophila 376MFSha3.1)
MKAQRPHRPPQFPRDAPHAEWRDHTLPYIVVAAVILLMVSLIVWIVDPAPPKTITLSAGP
HDSSFVIAADQYKKILAQNGVTLKVLESDGSVQNLKRLLDPKQHVDLALVQGGVADGLDT
SSLMSLGSVFYVPVVVFYRGTGVTQLSQLEGKRIAVGREGSGTRLLALKLLDANGIEPGG
DTTLMPSDGLQAATQLVKGEVDAAILSGDSATRGLMLRLLRVPGISVLNFDEASAYTRLF
PYLDQIDLPPGVLDLRHKIPPETVHLISPTVELVARTDLHPAISDLLIEAAQEVHGMPGL
LQRAGQFPSPIAHEYQISEDAQRYYRTGKSFLYRTLPFWLASIGDRTLVLLLPVAVLLFP
AMRLIPALYAWRVRSRIYRYYGSLIAIERGALAQTTDDERKRLFAELDQIEESLNRLRMP
LAYADAFYVLREHVGFVRARLAAAAH