Protein Info for H281DRAFT_01022 in Paraburkholderia bryophila 376MFSha3.1

Annotation: GntR family transcriptional regulator / MocR family aminotransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 470 PF00392: GntR" amino acids 17 to 80 (64 residues), 44 bits, see alignment E=1.4e-15 PF00155: Aminotran_1_2" amino acids 145 to 396 (252 residues), 84.3 bits, see alignment E=9.7e-28

Best Hits

KEGG orthology group: K00375, GntR family transcriptional regulator / MocR family aminotransferase (inferred from 95% identity to bug:BC1001_5720)

Predicted SEED Role

"Putative GntR-family regulatory protein and aminotransferase near polyamine transporter" in subsystem Polyamine Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (470 amino acids)

>H281DRAFT_01022 GntR family transcriptional regulator / MocR family aminotransferase (Paraburkholderia bryophila 376MFSha3.1)
MHPDLQIQLDRTAKLSLAEQIRASISRTIEAGLLPAGTRLPSWQDLAAQLGVARGTVQAA
YERLCDAQMIETFGAGGSRVAPRPRAVTARAQAPQLGAFMRAYEEMNAGPAIFQLGIPAF
EGLPEQLFARARSSNLLKTGCLSSLLYPDPRGEFELRREIAGYLSIARNVHCHPEQIFIT
SGYSSGLGLALRVLGLEGRKVWMEEPGFMVTRKGLELARLNMVPVPVDAEGLNVGYGIEN
AADAALAVVTPGQQAPLGSTLSLRRRLQLLEWAASRHAWIIEDDYLSELQLQGRPAPALA
SLDEGKRVVHIGSFSKTISPGLRLGFVVAPNELANAFAEVAATLAPAPSPVVQLATAQFM
RDGHYVRRVRRLKRLYSAQRDALCEQLRMRDAQWVNAGLAVLLRLPDGAPDVRIVREAMA
VGMAPSPLSVWFATPSWTLPGLLLGVATAPQQHLATSCQRLFEIIDRYRS