Protein Info for H281DRAFT_00932 in Paraburkholderia bryophila 376MFSha3.1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 246 signal peptide" amino acids 1 to 53 (53 residues), see Phobius details PF12796: Ank_2" amino acids 60 to 150 (91 residues), 45.2 bits, see alignment E=2.9e-15 amino acids 91 to 178 (88 residues), 64.4 bits, see alignment E=2.9e-21 amino acids 180 to 237 (58 residues), 38.1 bits, see alignment E=4.6e-13 PF00023: Ank" amino acids 121 to 150 (30 residues), 15.9 bits, see alignment 3.4e-06 amino acids 151 to 179 (29 residues), 32.7 bits, see alignment (E = 1.5e-11) amino acids 183 to 214 (32 residues), 35.4 bits, see alignment 2e-12 PF13637: Ank_4" amino acids 124 to 171 (48 residues), 29 bits, see alignment 2.6e-10 amino acids 152 to 204 (53 residues), 42.6 bits, see alignment E=1.4e-14 amino acids 185 to 224 (40 residues), 29.8 bits, see alignment 1.5e-10 PF13606: Ank_3" amino acids 151 to 178 (28 residues), 26.3 bits, see alignment (E = 1.5e-09) amino acids 186 to 210 (25 residues), 21.2 bits, see alignment (E = 7.1e-08) PF13857: Ank_5" amino acids 171 to 224 (54 residues), 39.3 bits, see alignment E=1.6e-13

Best Hits

KEGG orthology group: None (inferred from 89% identity to bug:BC1001_1671)

Predicted SEED Role

"FOG: Ankyrin repeat"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (246 amino acids)

>H281DRAFT_00932 hypothetical protein (Paraburkholderia bryophila 376MFSha3.1)
MINSSSFSDARQAAQTARAACMSARRGFSRAALAATVACAALSSLIAAPAEAAPIDSLIK
SVKFDDVDGVKKLLAKGMDPNSVDNQGMPLLVLAAREKSDKVGAALLANAKTNVEIEDKA
GENAMMMAALNGDIDFVKQLIAKDAEVNKKGWAPLHYAAANGHDDIVKLLLDHSAYVDAG
SPNGTTPLMMAARGGHVSTVKLLLDNGADLTVKNQIGLTALDFAKTYKEPDVVEGLTARL
QQMQQK