Protein Info for H281DRAFT_00827 in Paraburkholderia bryophila 376MFSha3.1

Annotation: transcriptional regulator, MerR family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 202 PF13411: MerR_1" amino acids 10 to 75 (66 residues), 77.3 bits, see alignment E=7.8e-26 PF00376: MerR" amino acids 10 to 46 (37 residues), 51.9 bits, see alignment 5.4e-18

Best Hits

KEGG orthology group: None (inferred from 81% identity to bpy:Bphyt_1823)

Predicted SEED Role

"transcription regulator, MerR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (202 amino acids)

>H281DRAFT_00827 transcriptional regulator, MerR family (Paraburkholderia bryophila 376MFSha3.1)
MSNDSPALLTVRDAAERLGVTPRTLKYYEERGLVSPARSEGRYRLYDDNDIQRFGRILRL
RSLGFSLHGITEMLKRPLEPVGGGHRFSTESLQQIHDAIAGQVDALDARIQAMRRELKEA
QKLRDELSPDLDYLKRRLAGENADALLEQRRNALAKGAKASKTAKGREDPQAPKIVKHKE
AGARPAAKPGNKPRASTAGKRS