Protein Info for H281DRAFT_00805 in Paraburkholderia bryophila 376MFSha3.1
Annotation: dTDP-4-amino-4,6-dideoxygalactose transaminase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 41% identical to ARNB_SERP5: UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (arnB) from Serratia proteamaculans (strain 568)
KEGG orthology group: None (inferred from 96% identity to bgf:BC1003_1515)Predicted SEED Role
"UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (EC 2.6.1.-)" in subsystem Lipid A-Ara4N pathway ( Polymyxin resistance ) (EC 2.6.1.-)
KEGG Metabolic Maps
- Aminophosphonate metabolism
- Arginine and proline metabolism
- Caprolactam degradation
- Lysine biosynthesis
- Lysine degradation
- Methionine metabolism
- Nucleotide sugars metabolism
Isozymes
Compare fitness of predicted isozymes for: 2.6.1.-
Use Curated BLAST to search for 2.6.1.-
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A2Z5MA21 at UniProt or InterPro
Protein Sequence (386 amino acids)
>H281DRAFT_00805 dTDP-4-amino-4,6-dideoxygalactose transaminase (Paraburkholderia bryophila 376MFSha3.1) MTQSTVPPLPFLPFVKPEIDEETIRGVADVLRSGWITTGPQNQKFEAALSEFCGGRPVRT FNSGTATLEIGLRIAGVGEGDEVITTPASWVSTSNVIYEVGATPVFADIDPVTRNIDLDK LEKAITPRTKALIPVYLSGLPVDMDRLYAIAREHKLRVVEDAAQAFGSTWNGKRIGAIGD MVSFSFHANKNLTSIEGGALVLNNEDEAVLAQKYRLQGITRTGFDGMDCDVLGGKYNLTD VAARVGLGQLPHLERFLAQRRKLARAYFAGFEGGAALKLGVGLPFADFENSNWHMFQITL PLEKLSIDRAGFMGQLKERGIGSGVHYPAIHLFSLYRARGFKEGMFPNAERFGATNVTLP LFTLMNESDVERVCRAVNEICEQYGK