Protein Info for H281DRAFT_00801 in Paraburkholderia bryophila 376MFSha3.1
Annotation: Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 37% identical to ARND_AERS4: Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD (arnD) from Aeromonas salmonicida (strain A449)
KEGG orthology group: None (inferred from 93% identity to bxe:Bxe_A2390)Predicted SEED Role
"Polymyxin resistance protein PmrJ, predicted deacetylase" in subsystem Lipid A-Ara4N pathway ( Polymyxin resistance )
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (297 amino acids)
>H281DRAFT_00801 Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family (Paraburkholderia bryophila 376MFSha3.1) LARIVLKIDVDTLRGTREGVPNLARIFDRFKARATFLFSLGPDHTGWAMRRVLRPGFLQK VSRTSVVEHYGLKQLMYGVLLPGPDIGAKASAEMRAIHEAGFECGIHTWDHVYWQDNVRS KDRAWTSAQMQKSRDRFIEIFGAPPVTHGAAGWQMNGHAFEQIDAWGMHYASDGRGHSPY FPVVDGRTLAHVQMPTTLPTLDEVLGVDGVDEHNVAAFMLKHTENNPHDQVFTLHAELEG QKLAPNFEQLLEGWRAQGHTFATMGDYYATLDRGALPSYPVTWGEIPGRSGELIVQP