Protein Info for H281DRAFT_00719 in Paraburkholderia bryophila 376MFSha3.1

Annotation: polysaccharide export outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 397 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF02563: Poly_export" amino acids 79 to 193 (115 residues), 78.3 bits, see alignment E=3.9e-26 PF10531: SLBB" amino acids 201 to 248 (48 residues), 25.8 bits, see alignment 7.7e-10 amino acids 284 to 330 (47 residues), 17 bits, see alignment 4.2e-07

Best Hits

KEGG orthology group: None (inferred from 94% identity to bug:BC1001_1925)

Predicted SEED Role

"Polysaccharide export lipoprotein Wza" in subsystem Colanic acid biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5M9V8 at UniProt or InterPro

Protein Sequence (397 amino acids)

>H281DRAFT_00719 polysaccharide export outer membrane protein (Paraburkholderia bryophila 376MFSha3.1)
MTIKTIAATLAAASLCACSLAPGPYLDTKRLEPPAPPEQTAEKFPVHAIDVGYFREQRAA
TVPAVCPLTCLTPQTRGLYEYQLGIGDQLTIIVWDHPELTGGVGLATGTPPLPGGSAAPS
PGPTQTQGATPIAPTTMSSGEGGLTVRVANNGTIFFPRVGRIKVQGMTAQQVQEALTKGL
ARTIRDPQLDVRVSGFNSQSVQVTGNLRTPASEAITDAPLTVLDAINRAGGALPDADLQN
VGVTRDGKRHTVDVAALLETGDPQQNVLLKDGDIIDVPDRSNSRVFVLGEVNKPTSLPMN
RGRLTLADALTGAGSLDVKTGDPRYVYVVRGADKTLTPDVYQLDMTQVDALMLMTKFDLQ
PKDVVYVQVSNAARFNRALEQITPTLQSLFYTVQLSR