Protein Info for H281DRAFT_00581 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Superfamily II DNA and RNA helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 540 PF00270: DEAD" amino acids 71 to 256 (186 residues), 156 bits, see alignment E=1.2e-49 PF04851: ResIII" amino acids 84 to 255 (172 residues), 22.6 bits, see alignment E=1.3e-08 PF00271: Helicase_C" amino acids 299 to 406 (108 residues), 101 bits, see alignment E=7.1e-33

Best Hits

KEGG orthology group: None (inferred from 97% identity to bpy:Bphyt_2485)

Predicted SEED Role

"ATP-dependent RNA helicase NGO0650" in subsystem ATP-dependent RNA helicases, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MAY2 at UniProt or InterPro

Protein Sequence (540 amino acids)

>H281DRAFT_00581 Superfamily II DNA and RNA helicase (Paraburkholderia bryophila 376MFSha3.1)
MTSSNTPSSPLNAIADQALGLADAPVQAAAVAAAPAVAAEAAAPAGPTFASLGLSADVVS
ALTAAGYQNPTPVQQRAVPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFSQLQKAQASQP
REPRPADGARTRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKRLRTVSILGGVAY
GQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRMLDMGFIEDIETIVA
ATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRLEQRTNIAQTVHYVDDRDHKDR
LLDHLLRDAGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDLPQGARNRTIKALRER
RVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIAVSLVHHAEQ
GALKRIERFVRTPLPVNVVAGFEPRKSAPSGNGRPGFGGRGRPGGGNGGGRRFGSGSGKP
AGNGSSSRSGTGGGWAGKSAGGGSRDGGFGGGSREGYGGSRDGGYGARRSDGPRTARRGS