Protein Info for H281DRAFT_00530 in Paraburkholderia bryophila 376MFSha3.1

Annotation: uncharacterized protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 782 PF09371: Tex_N" amino acids 13 to 197 (185 residues), 248.2 bits, see alignment E=1.2e-77 PF16921: Tex_YqgF" amino acids 330 to 456 (127 residues), 177.4 bits, see alignment E=3.9e-56 PF12836: HHH_3" amino acids 496 to 560 (65 residues), 98.1 bits, see alignment E=6.8e-32 PF17674: HHH_9" amino acids 566 to 635 (70 residues), 81.3 bits, see alignment E=1.9e-26 PF00575: S1" amino acids 654 to 725 (72 residues), 75.9 bits, see alignment E=6.8e-25

Best Hits

Swiss-Prot: 65% identical to TEX_BORPE: Protein tex (tex) from Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)

KEGG orthology group: K06959, uncharacterized protein (inferred from 97% identity to bpy:Bphyt_2527)

Predicted SEED Role

"Transcription accessory protein (S1 RNA-binding domain)" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MBX9 at UniProt or InterPro

Protein Sequence (782 amino acids)

>H281DRAFT_00530 uncharacterized protein (Paraburkholderia bryophila 376MFSha3.1)
MTETVALKIVQRIAAELSVQPRQVAAAVQLLDEGATVPFIARYRKEVTDNLDDTQLRNLE
ERLLYLRELEDRRAAIVASIDEQGKLTDELRNAIEGADSKQVLEDLYLPYKPKRRTRAQI
AREAGLQPLADALLGNPLLDPQTEATAYVDAEKGVADVKAALDGARDILSEQFGETADLL
GKLRDYLFNQGVVSSKVVEGKETAEEEKFRDYYDYAETIRTVPSHRALALFRGRNAGVLM
IKLGLGEELDAQVPHPGEALIARHFGIANQNRPADKWLSDVCRWCWRVKVQPHIENELLT
NLRDEAEHEAIRVFARNLKDLLLAAPAGPKAVIGLDPGMRTGVKVAVVDRTGKVLVTDVI
YPHEPRRDWDGSIAKLARICAQTQAELISIGNGTASRETDKLASELIARHPEFKLQKIVV
SEAGASVYSASELAAKEFPDMDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVN
QRELARSLDAVVEDCVNAVGVDANTASVALLARVSGLNATLARNIVDYRDANGPFPSRDH
LRKVPRLGDKTFEQAAGFLRINNGENPLDRSSVHPEAYPVVERILAKINKHVGEVLGNRD
ALRGLSPGEFVDERFGLPTVRDILLELEKPGRDPRPEFKTATFREGVEKVSDLTPGMVLE
GVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQIVKVKVLEVDVKRQRI
ALTMRLDDEFGAAAARSGGGAQQDRGNFGRSGGNGRGASQQRSREPEAGGAMAAAFAKLK
QK