Protein Info for H281DRAFT_00445 in Paraburkholderia bryophila 376MFSha3.1

Annotation: ATP-dependent helicase HrpA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1484 TIGR01967: RNA helicase HrpA" amino acids 150 to 1136 (987 residues), 1394.2 bits, see alignment E=0 PF00270: DEAD" amino acids 169 to 321 (153 residues), 26.3 bits, see alignment E=1.8e-09 PF00271: Helicase_C" amino acids 402 to 524 (123 residues), 44.2 bits, see alignment E=6.3e-15 PF04408: HA2_N" amino acids 588 to 614 (27 residues), 31.9 bits, see alignment (E = 3.3e-11) PF21010: HA2_C" amino acids 615 to 668 (54 residues), 33.2 bits, see alignment (E = 1.9e-11) PF07717: OB_NTP_bind" amino acids 739 to 815 (77 residues), 53.3 bits, see alignment 7.8e-18 PF11898: DUF3418" amino acids 830 to 1480 (651 residues), 711.3 bits, see alignment E=3.3e-217

Best Hits

Predicted SEED Role

"macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif."

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1484 amino acids)

>H281DRAFT_00445 ATP-dependent helicase HrpA (Paraburkholderia bryophila 376MFSha3.1)
MSNVPKSPAAANENAAPAADQANSGDAQRRPEKDANRSNPDAPRKAREPHRAGERAQASS
NHKNPSRTAKDVERAEPPGETRSAPESRERGEQRKQRGEQRGEQRGEQRGQSAQSGQRDQ
RGQPEAGKPSRQQPLREPRAPREARVVQPNPVPPITFPEALPVSGRRDEIAKAIAENQVV
IVSGETGSGKTTQLPKICLALGRGLGAGGSGLIGHTQPRRIAASATGRRIAEELGTPFGE
VVGYKVRFTDNLSPGASVKLMTDGILLAETQTDPLLKAYDTLIIDEAHERSLNIDFLLGY
LKEILARRPDLKLIVTSATIDADRFARHFGSEEKPAPVIEVSGRLYPVEVRYRPIEEDSP
AVKAAQGTSGTSGGPASRERAKTPRETGKERDRDLMEAIVDAVDELCREGPGDVLVFLPG
EREIRDAAEALRKHHPPHTEILPLFARLSAADQERVFRTSNARRIVLATNVAETSLTVPG
IRYVVDTGLARVKRYSYRNKVEQLQVEPISQAAANQRAGRCGRVADGICIRLYDESDYQS
RVRFTDPEILRSSLASVILRMKSLHLTAIETFPFIEPPPGRAIADGYQLLNELGAVDDDN
QLTPLGRELARLPLDPRVGRMILAARDQQSLKEVLIIASALSVQDPRDRPIEAQEQADQA
HRRFADERSEFLQWLKIWNWFEEAIAHKKSNKQLHEECRKNFLSQLRLREWRDVHSQLLT
VVREHGWRLNEAEATFEQIHLALLTGLLGNIGLKADDEPYYLGARGIKFYLWPGSALVKK
AGKWVMAAELVETSRLYARCIAKIEPEWIEKIGSHLLKKSLSEPHWEKRAAQVSAFERAV
LYGLPIYHRRRVSFGKQDPARARELFIRGALVEGEFDTKLGFFAHNRKLLADIEQLEHKS
RRQDVLVDDELIFAFYDQALPKGIYTGASFERWYRDELKKSGQPEDKLRLLYLSRDDLMR
HEAAGVTTDLFPKRMTMAGVEMALTYHFEPGSPRDGVTLAVPLYALNQVDARRCEWLVPG
MLKEKTQLLLKSLPQKLRRHCVPLPEYAAGFVDRHGPPRFGAGGLLEALIADIREQKQLM
LKQSDFKLETLPPHLFMNFKVVDEHGRQLAMGRNLSQLRAELGGQAQQHFQKIASSAAGA
ALADAAGSRTDGAGVGGAPRTAPASSGQAQRGKGAAAPAPQTPSQGGAGSAGSAGSAGGT
ALYENLTTWNFGKLPELLEIRRGGQTLFGYPALVDRGTHCDVEVFDSPDEAARIHRAGLR
RLFALQLKEPIKYLEKNLPGLREMAMQFMTRGTQEELRDQLIDTALDRACLQDPLPDDDV
SFHTRRDEGRSRLTLLAQEIARLVGQILGEYASVLKKLVQAKSFTAAHADMQNQLDALIG
KRFVVDTPYSQLTHFPRYLKGIALRIDKLKADPARDARQFAEFQPLLQNYQRAVAQRGGV
PDARLSEFRWLLEELRVSLFAQELRTPMPVSVKRLYKVWDSMQR