Protein Info for H281DRAFT_00418 in Paraburkholderia bryophila 376MFSha3.1

Annotation: putative spermidine/putrescine transport system substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 359 signal peptide" amino acids 1 to 48 (48 residues), see Phobius details PF13416: SBP_bac_8" amino acids 67 to 318 (252 residues), 96.5 bits, see alignment E=4.9e-31 PF13531: SBP_bac_11" amino acids 68 to 308 (241 residues), 66.3 bits, see alignment E=7.1e-22 PF01547: SBP_bac_1" amino acids 69 to 303 (235 residues), 59.9 bits, see alignment E=8.8e-20 PF13343: SBP_bac_6" amino acids 99 to 343 (245 residues), 169.1 bits, see alignment E=2.5e-53

Best Hits

KEGG orthology group: None (inferred from 94% identity to bug:BC1001_2346)

Predicted SEED Role

"ABC-type Fe3+ transport system, periplasmic component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MBL0 at UniProt or InterPro

Protein Sequence (359 amino acids)

>H281DRAFT_00418 putative spermidine/putrescine transport system substrate-binding protein (Paraburkholderia bryophila 376MFSha3.1)
VIRSSVRLASAVSPLMRRLAQSTAVALCAGTLVTAALATVTSQTAHADETAICYNCPPEW
ADWASQIKAIQQKTGIRVPFDNKNSGQSIAQLMAEQKSPVADVVYLGVSSAFQAKDKGVV
EPYKPAHWDDIPANMKDPQGYWFTIHSGTLGFFVNKDALEGKPVPRSWADLLKPEYKGMV
GYLDPSSAFVGYAGAVAVNQALGGTLDNFEPGLDWFRKLKANAPIVPKQTAYARVMSGEI
PILLDYDFDAYRAKYKDHANVEFVIPKEGTISVPYVMSLVKGAPHEANGKKVLDFVLSDE
GQKLWADAYLRPVRANAMSAQTAAKFLPATEYARAKPVDFGKMAEKQSSFGERYLQVMH