Protein Info for H281DRAFT_00390 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Beta-barrel assembly machine subunit BamC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 410 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF06804: Lipoprotein_18" amino acids 41 to 235 (195 residues), 49.6 bits, see alignment E=1.4e-17 amino acids 261 to 406 (146 residues), 55.7 bits, see alignment E=2e-19

Best Hits

KEGG orthology group: K07287, lipoprotein-34 (inferred from 93% identity to bug:BC1001_2374)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5M913 at UniProt or InterPro

Protein Sequence (410 amino acids)

>H281DRAFT_00390 Beta-barrel assembly machine subunit BamC (Paraburkholderia bryophila 376MFSha3.1)
MTDLRLTKRFAVMLMAGGLVAGCGTSSPTKVDYKSDSKSKQVSLAVPPNMIDETPDQRSL
PPQGGETSLSTLRQVQAQAPAANTLAVVPPVSNMHIQRDGTESWLVIDGKAPADAWPQIR
RFWQEQGFLLVVDQRDKGVMETDWNETHAQINDGLIRSTLSKALGNSYVTSERNKYRTRL
EAAPNGGTYVFISQKGMREALTGTNNDSSTWEPKANDPGLEQEYLKRLMAALALADSRAK
SGGGQTAELSPAGAQTAPNAATSGAKSAAAATAAQNVALSAQQPVRDPDAGNASAQLSSN
ELTLGEPYDRAWLRVGLALDRSNFTVDDRDLSRGLYFVRYVDPKDMSSAEQGFWSQVFHG
KKEKVAKQYRVNVRALTPDQTRVAVVDDKGGVDESPQATQIMTLMADQLH