Protein Info for H281DRAFT_00337 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Uncharacterized membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 438 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 69 to 92 (24 residues), see Phobius details amino acids 108 to 127 (20 residues), see Phobius details amino acids 137 to 159 (23 residues), see Phobius details PF10011: DUF2254" amino acids 14 to 381 (368 residues), 271 bits, see alignment E=7.3e-85

Best Hits

KEGG orthology group: None (inferred from 84% identity to bge:BC1002_5953)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (438 amino acids)

>H281DRAFT_00337 Uncharacterized membrane protein (Paraburkholderia bryophila 376MFSha3.1)
MDWNRWYSLKSYLRSSLWTVPLIAIAIYAVVKPVAEMIGRWMTRQGTLDAKTSLLGLSMT
GARSLLGDIVSADLAFLVFTFGSLLVAIQVAGGQYTPRIIATTLLRDNVIRSISGLFVFT
LLFANRTAGWMGENQVLQLQVFIAALFGFTSVVAFLFLIDYAAKFLRPVSLVARVGEQGI
AVIESVYPSPSTGVVVAPELHKERGVPDRIVCQRGKPGIVLAVNLERLVAKARRADVVIE
FVPQVGDFVAVDEPLFHLYGNFGAIDENKLRTLVAFGTERTMEQDPMFAFRILVDIALKA
LSAAINDPTTAVLAIDQLHRLLRMVGKRSLRVEEIEDRSGRVRVILRTPNWEDFVHISFR
EIRQYGASSIQIARRLRAAIENLIQCLPEHRHEALRVELTLIDRAITRHHPFPEDLALAR
IPDSQGLGGSAVSTTNNY