Protein Info for H281DRAFT_00332 in Paraburkholderia bryophila 376MFSha3.1

Annotation: methyl-accepting chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 565 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 192 to 213 (22 residues), see Phobius details PF02203: TarH" amino acids 5 to 157 (153 residues), 31.9 bits, see alignment E=2.4e-11 PF12729: 4HB_MCP_1" amino acids 6 to 188 (183 residues), 87.8 bits, see alignment E=1.4e-28 PF00672: HAMP" amino acids 212 to 262 (51 residues), 34.1 bits, see alignment 5.8e-12 PF00015: MCPsignal" amino acids 327 to 483 (157 residues), 183.8 bits, see alignment E=5.3e-58

Best Hits

KEGG orthology group: K03406, methyl-accepting chemotaxis protein (inferred from 78% identity to bvi:Bcep1808_5173)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (565 amino acids)

>H281DRAFT_00332 methyl-accepting chemotaxis protein (Paraburkholderia bryophila 376MFSha3.1)
MKYLGNLRIGARLRVGFGVALLLLLLTGGLAVLQVSRIYGGTQDIAENWLPSVQSLGEIR
ALANGVRRASLRSILESDARQKQDQRTQHDAALSSLSTAMADYEKLVSSHEEQQIVDNMK
KAWTTYLGSDKSLLELSESGDAGFAAAKTLATGESARQFTDALQWIEQGVKLNRAGAAAA
STEAASNYRSTVVLTATLACAAILLSIFVAWLITRSIVTPLGRAVGIAETVARGDLTSDI
AVSGSDETSQLLLALRNMNERLVDVVSRVRSSSESIATGSSQIAAGNTDLSQRTEEQAAS
LEETAASMEQLTATVKQNTDNAKQGNTLASNASEVAARGGEVVAQVVHTMHDISASSAKV
AEIISVIEGIAFQTNILALNAAVEAARAGEEGRGFAVVASEVRGLAQRSASAAKEIKELI
SQSVAKVEAGTSLVDNAGTTMKEVVDSVKRVTDLMGEIASASVEQHTGIEQVNQAVMQMD
EVTQQNAALVEEASAAAQSMAAQSGTLRELVSTFRLPAHVVGLASLPEHTTVAASRPMLK
TRKSVQRRTDAPVMSGDSNPAWQSF