Protein Info for H281DRAFT_00284 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 404 transmembrane" amino acids 35 to 55 (21 residues), see Phobius details amino acids 61 to 77 (17 residues), see Phobius details amino acids 88 to 107 (20 residues), see Phobius details amino acids 113 to 131 (19 residues), see Phobius details amino acids 133 to 151 (19 residues), see Phobius details amino acids 159 to 183 (25 residues), see Phobius details PF04632: FUSC" amino acids 35 to 292 (258 residues), 66 bits, see alignment E=2.9e-22 PF13515: FUSC_2" amino acids 50 to 175 (126 residues), 45 bits, see alignment E=1.2e-15

Best Hits

KEGG orthology group: None (inferred from 83% identity to bug:BC1001_0937)

Predicted SEED Role

"FIG028593: membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (404 amino acids)

>H281DRAFT_00284 Predicted membrane protein (Paraburkholderia bryophila 376MFSha3.1)
MAPADSRTVIPRRSAVSRMVRAITSPYYRYRHAKVLHSLRVGLAMLFSILATTGIDIPHG
IWSSVTLLVVIGGLQHHGNIRKKAAERAAGTLLGASIGLLLIVQQNLLGSLPLTYVLMSI
FAAICAWFAIGSSGYIGLLTAITMCIVAGHGDNLIDVGLWRTLNVLIGIVIALAFSFALP
LHATYSWRYGIAANLRECAQIYTRLLEGETIGEEEQVKRFLAINRRLVQLRSLMPSVAKE
IDVPQAKLEEIQRLHRSVLSSLELLATGPLMQAGAAARTAYAEQCGAEVRAVRAMLLAIA
RGLRFGRATHFRIPAAGDPAGGGPVDCTPAAGDPVAGNPVAGNPAASPLVRTAGDVASKL
PPDLQGPYWLGQRLAEQVDRLRAALLETEVNWNIERRSRVLQKA